Author

Isaac Neuhaus

Bristol-Myers Squibb (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3 Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Research Focus:software / tool· 3 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Ryan Golhar· 3 shared Alexis J. CombesiD· 1 shared Alice M. WalshiD· 1 shared Anna K. HaemeliD· 1 shared Athea VichasiD· 1 shared Baohong ZhangiD· 1 shared Constance Brett· 1 shared Emily FlynniD· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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3 shared papersBioinformatics

Ryan Golhar

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Author profile →

5 papers

Recent·Most cited

ALPINE: A Scalable Pipeline for Comprehensive Classification of Gene-Editing Outcomes from Long-Read Amplicon Sequencing

Yu Chen, Xing‐Huang Gao, Athea Vichas, Jianbin Wang, Ryan Golhar, Isaac Neuhaus

ALPINE classifies gene-editing outcomes from long-read amplicon sequencing into 10+ categories, including DNA repair vector integrations, with high accuracy.

Bioinformatics · Jul 1, 2026Peer-reviewedBioinformatics

Spatial Orchestration of Skin Fibrosis by a CD8+ T cell-Myofibroblast Axis

Ian C. Boothby, Thomas Chi Chung Gan, Vrinda Johri, Emily Flynn, Maha Kazmi, Lenka Maliskova, Saba Shaikh, Shivaram Yellamilli, Gabriela K. Fragiadakis, Isaac Neuhaus, Walter L. Eckalbar, Jarish N. Cohen, Alexis J. Combes, Anna K. Haemel, Michael D. Rosenblum, Maxime Kinet

The paper identifies CD8+ T cells as key drivers of fibrosis in morphea-spectrum diseases through fibroblast IFN-γ signaling using spatial transcriptomics.

bioRxiv · Jun 22, 2026 · PreprintImmunology

Rapid Single Cell Evaluation of Human Disease and Disorder Targets Using REVEAL: SingleCell™

Namit Kumar, Ryan Golhar, Kriti Sen Sharma, James L. Holloway, Srikant Sarangi, Isaac Neuhaus, Alice M. Walsh, Zachary W. Pitluk

The paper introduces REVEAL: SingleCell, a database platform for querying large single-cell datasets to evaluate gene expression in diseases like COVID-19, showing it can rapidly analyze 2.2 million cells across 32 projects.

BMC Genomics · Jan 6, 2021Peer-reviewedMolecular Biology

Single Cell Viewer (SCV): An interactive visualization data portal for single cell RNA sequence data

Shuoguo Wang, Constance Brett, Mohan T. Bolisetty, Ryan Golhar, Isaac Neuhaus, Kandasamy Ravi

The paper introduces SCV, an interactive visualization tool for single cell RNA-seq data, providing exploratory analysis and visualization options.

bioRxiv · Jun 12, 2019 · PreprintBioinformatics

canvasXpress: A versatile interactive high-resolution scientific multi-panel visualization toolkit

Baohong Zhang, Shanrong Zhao, Isaac Neuhaus

The paper introduces canvasXpress, an interactive visualization toolkit for scientific and genomics data, highlighting its features and real-world applications in bioinformatics.

Bioinformatics · May 2, 2018Peer-reviewedBioinformatics