Author

J. Cheema

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 4 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:Arabidopsis· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Q. Liu· 2 shared X. Yang· 2 shared Y. DING· 2 shared Y. Zhang· 2 shared A. A. Mehrabi· 1 shared A. Ballal· 1 shared A. D. Kingdon· 1 shared A. F. Justesen· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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2 shared papersPlant Biology

Q. Liu

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Author profile →

6 papers

Recent·Most cited

Distinct accessory roles of Arabidopsis VEL proteins in Polycomb silencing

E. Franco-Echevarria, M. Nielsen, A. Schulten, J. Cheema, T. Morgan, M. Bienz, C. Dean

This study identifies distinct roles of Arabidopsis VEL proteins in Polycomb silencing, showing VRN5 is required for H3K27me2 while VIN3 interacts with VAL1 to regulate H3K27me3.

bioRxiv · May 22, 2023 · PreprintPlant Biology

Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition

A. Pacheco-Moreno, F. L. Stefanato, J. J. Ford, C. Trippel, S. Uszkoreit, L. Ferrafiat, L. Grenga, R. Dickens, N. Kelly, A. D. Kingdon, L. Ambrosetti, S. A. Nepogodiev, K. C. Findlay, J. Cheema, M. Trick, , A. W. Truman

The paper identifies specialized metabolites in Pseudomonas that inhibit potato pathogens in agricultural soil.

bioRxiv · Nov 10, 2021Microbiology

Evolution of the bread wheat D-subgenome and enriching it with diversity from Aegilops tauschii

K. Gaurav, S. Arora, P. Silva, J. Sanchez-Martin, R. Horsnell, L. Gao, G. S. Brar, V. Widrig, J. Raupp, N. Singh, S. Wu, S. M. Kale, C. Chinoy, P. Nicholson, J. Quiroz-Chavez, , N. Chayut

The paper sequences 242 Ae. tauschii accessions to study genetic diversity in the bread wheat D-subgenome, identifies disease resistance genes, and demonstrates their functional transfer into wheat.

bioRxiv · Jan 31, 2021 · PreprintPlant Biology

RNA G-quadruplex structures exist and function in vivo

X. Yang, J. Cheema, Y. Zhang, H. Deng, S. Duncan, M. I. Umar, J. Zhao, Q. Liu, X. Cao, C. K. Kwok, Y. DING

The paper identifies RNA G-quadruplex structures in Arabidopsis and rice, showing they regulate translation and plant growth.

bioRxiv · Nov 12, 2019 · PreprintPlant Biology

In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants

Y. DING, Z. Liu, Q. Liu, X. Yang, Y. Zhang, M. Norris, X. Chen, J. Cheema

The paper uses SHAPE profiling to study RNA structure in Arabidopsis nuclei and identifies structural features linked to mRNA splicing and polyadenylation.

bioRxiv · Nov 12, 2019Plant Biology

Sparse epistatic patterns in the evolution of terpene synthases

A. Ballal, C. Laurendon, M. Salmon, M. Vardakou, J. Cheema, P. E. O'Maille, A. V. Morozov

The paper investigates sequence determinants of enzyme activity and specificity in terpene synthases using biochemical and computational methods to model free energy landscapes and epistasis.

bioRxiv · Nov 10, 2019Evolutionary Biology