Author

J. Schluter

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 6

Signature Assays, Organisms & Methods

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Assay:metagenomics· 6 Organism:human· 4 Research Focus:cell type annotation· 3 Approach:statistical model· 3 Approach:deep learning· 2 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Organism:mouse· 2

Frequent Co-Authors

B. P. Taylor· 3 shared E. Fontana· 3 shared G. A. Hussey· 3 shared J. B. Xavier· 3 shared M. R. M. van den Brink· 3 shared Y. Taur· 3 shared A. Dai· 2 shared A. P. Sullivan· 2 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersMicrobiology

B. P. Taylor

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Author profile →

6 papers

Recent·Most cited

Microbiota and metabolic adaptation shape Staphylococcus aureus virulence and antimicrobial resistance during intestinal colonization

C. Zhou, M. B. Pawline, A. Pironti, S. M. Morales, A. I. Perault, R. J. Ulrich, M. J. Podkowik, A. Lejeune, A. DuMont, F.-X. Stubbe, A. Korman, D. R. Jones, J. Schluter, A. R. Richardson, P. D. Fey, , B. Shopsin

This study shows that gut microbiota depletion allows MRSA to adapt through genetic changes that enhance colonization fitness but reduce antimicrobial resistance and virulence.

bioRxiv · May 11, 2024 · PreprintMicrobiology

The MTIST platform: a microbiome time series inference standardized test simulation, dataset, and scoring systems

G. A. Hussey, C. Zhang, A. P. Sullivan, D. Fenyo, J. Schluter

The paper introduces MTIST, a platform for benchmarking microbial ecosystem inference tools using simulated time series data and an ecological sign score.

bioRxiv · Oct 18, 2022 · PreprintMicrobiology

The TaxUMAP atlas: efficient display of large clinical microbiome data reveals ecological competition involved in protection against bacteremia

J. Schluter, A. Djukovic, B. P. Taylor, J. Yan, C. Duan, G. A. Hussey, C. Liao, S. Sharma, E. Fontana, L. A. Amoretti, R. J. Wright, A. Dai, J. Peled, Y. Taur, M.-A. Perales, , J. B. Xavier

The paper introduces TaxUMAP, a visualization tool for microbiome data, revealing that Klebsiella species reduce bacteremia risk through competition with other pathogens.

bioRxiv · Sep 27, 2022Microbiology

Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation.

M. Venzon, L. Bernard-Raichon, J. Klein, J. E. Axelrad, C. Zhang, G. A. Hussey, A. P. Sullivan, A. Cassanovas-Massana, M. G. Noval, A. M. Valero-Jimenez, J. Gago, G. Putzel, A. Pironti, E. Wilder, Yale IMPACT Research Team, , J. Schluter

The paper shows that gut microbiome dysbiosis in COVID-19 patients is linked to increased risk of bacteremia and microbial translocation.

bioRxiv · Jul 15, 2021 · PreprintMicrobiology

An association between the gut microbiota and immune cell dynamics in humans.

J. Schluter, J. U. Peled, B. P. Taylor, M. Smith, K. A. Markey, Y. Taur, R. Niehus, A. Staffas, A. Dai, E. Fontana, L. A. Amoretti, R. J. Wright, S. Morjaria, M. Fenelus, M. S. Pessin, , J. B. Xavier

The paper identifies associations between gut bacteria and white blood cell dynamics in humans during recovery from hematopoietic cell transplantation.

bioRxiv · May 7, 2020 · PreprintMicrobiology

Antibiotic-induced shifts in fecal microbiota density and composition during hematopoietic stem cell transplantation

S. Morjaria, J. Schluter, B. P. Taylor, E. R. Littmann, R. A. Carter, E. Fontana, J. U. Peled, M. R. M. van den Brink, J. B. Xavier, Y. Taur

The paper analyzes microbiota changes in HCT patients using daily stool sampling and antibiotic impact assessment.

bioRxiv · Apr 13, 2019Microbiology