Author

J. T. Bird

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Cancer Biology· 1 Ecology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Assay:proteomics· 3 Approach:statistical model· 3 Research Focus:ecology & biodiversity· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

A. Bowlin· 1 shared A. D. Steen· 1 shared A. J. Gies· 1 shared A. J. Tackett· 1 shared A. Lipzen· 1 shared A. T. Webber· 1 shared B. J. Baker· 1 shared C. L. Washam· 1 shared

Activity by Year

2019-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 7 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperImmunology

A. Bowlin

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

In vivo reprogramming of murine host immune response genes following Leishmania major infection.

G. Venugopal, J. T. Bird, C. L. Washam, H. Roys, A. Bowlin, S. D. Byrum, T. Weinkopff

This study uses bulk and single-cell RNA sequencing to analyze gene expression changes in mice infected with Leishmania major, identifying upregulated immune pathways and downregulated ribosomal pathways, as well as a novel role for EIF2 signaling.

bioRxiv · Oct 5, 2021 · PreprintImmunology

Evidence for a growth zone for deep subsurface microbial clades in near-surface anoxic sediments

K. G. Lloyd, J. T. Bird, J. Buongiorno, E. Deas, R. Kevorkian, T. Noordhoek, J. Rosalsky, T. Roy

The paper shows that certain deep subsurface microbial clades increase in population size in shallow marine sediments, challenging the idea that they remain in a state of prolonged torpor during burial.

Applied and Environmental Microbiology · Sep 17, 2020Peer-reviewedMicrobiology

Methionine stress induces a ferroptotic gene signature in methionine dependent cancer cells

K. F. Wallis, J. T. Bird, A. J. Gies, S. G. Mackintosh, A. J. Tackett, S. Byrum, I. R. Miousse

The paper shows that methionine stress induces a ferroptotic gene signature in methionine-dependent cancer cells, which is reduced in methionine-independent cells.

bioRxiv · Aug 18, 2020 · PreprintCancer Biology

Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria

R. K. Fritts, J. T. Bird, M. G. Behringer, A. Lipzen, J. Martin, M. Lynch, J. B. McKinlay

The paper shows that enhanced nutrient uptake by recipient bacteria, not increased excretion by producers, drives emergent cross-feeding in microbial communities.

bioRxiv · Apr 4, 2020Microbiology

Kinetics and identities of extracellular peptidases in subsurface sediments of the White Oak River Estuary, NC

A. D. Steen, R. T. Kevorkian, J. T. Bird, N. Dombrowski, B. J. Baker, S. M. Hagen, K. H. Mulligan, J. M. Schmidt, A. T. Webber, T. M. Royalty, M. J. Alperin

The paper measures extracellular peptidase kinetics and identifies peptidase classes in anoxic estuarine sediments, showing adaptation to degraded organic matter.

bioRxiv · Jul 15, 2019 · PreprintEcology