Author

J.-M. Chandonia

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Research Focus:cell type annotation· 1 Organism:E. coli· 1 Research Focus:host-pathogen & immune response· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

A. M. Deutschbauer· 3 shared A. P. Arkin· 3 shared J. V. Kuehl· 2 shared R. Chakraborty· 2 shared A. Kothari· 1 shared A. Mukhopadhyay· 1 shared A. Prieto· 1 shared D. A. Stahl· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersMicrobiology

A. M. Deutschbauer

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Author profile →

3 papers

Recent·Most cited

Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface

J. L. Goff, E. G. Szink, K. L. Durrence, L. M. Lui, T. N. Nielsen, J. V. Kuehl, K. A. Hunt, J.-M. Chandonia, J. Huang, M. P. Thorgersen, F. L. Poole, D. A. Stahl, R. Chakraborty, A. M. Deutschbauer, A. P. Arkin, M. W. W. Adams

This study investigates how genomic and environmental factors influence the distribution of Castellaniella species in a contaminated subsurface, identifying genetic mechanisms underlying their adaptation to stress.

bioRxiv · Feb 3, 2024 · PreprintMicrobiology

Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance

A. Kothari, S. Roux, H. Zhang, A. Prieto, D. Soneja, J.-M. Chandonia, S. J. Spencer, X. Wu, S. Altenburg, M. W. Fields, A. M. Deutschbauer, A. P. Arkin, E. J. Alm, R. Chakraborty, A. Mukhopadhyay

The paper identifies 41 viral clusters in groundwater plasmidomes, links them to bacterial hosts, and detects novel phage genera and host-specific genes.

mSystems · Jun 29, 2021Peer-reviewedMicrobiology

Large-scale Genetic Characterization of a Model Sulfate Reducing Bacterium

V. V. Trotter, M. Shatsky, M. N. Price, T. R. Juba, G. M. Zane, K. P. De Leon, E. L. Majumder, Q. Gui, R. Ali, K. M. Wetmore, J. V. Kuehl, A. P. Arkin, J. D. Wall, A. M. Deutschbauer, J.-M. Chandonia, G. P. Butland

This study characterizes the genetic essentiality and conditional phenotypes of Desulfovibrio vulgaris Hildenborough using a transposon mutant library under various metabolic and stress conditions.

bioRxiv · Jan 13, 2021 · PreprintMicrobiology