Author

L. M. Lui

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Assay:metagenomics· 4 Research Focus:host-pathogen & immune response· 3 Organism:bacteria (other)· 2 Research Focus:cell type annotation· 2 Assay:whole-genome sequencing· 2 Research Focus:clustering· 1 Assay:DNA methylation· 1

Frequent Co-Authors

A. P. Arkin· 5 shared T. N. Nielsen· 4 shared A. M. Deutschbauer· 3 shared A. E. Kazakov· 2 shared F. L. Poole· 2 shared J. L. Goff· 2 shared J. V. Kuehl· 2 shared M. W. W. Adams· 2 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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5 shared papersMicrobiology

A. P. Arkin

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Author profile →

6 papers

Recent·Most cited

Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface

J. L. Goff, E. G. Szink, K. L. Durrence, L. M. Lui, T. N. Nielsen, J. V. Kuehl, K. A. Hunt, J.-M. Chandonia, J. Huang, M. P. Thorgersen, F. L. Poole, D. A. Stahl, R. Chakraborty, A. M. Deutschbauer, A. P. Arkin, M. W. W. Adams

This study investigates how genomic and environmental factors influence the distribution of Castellaniella species in a contaminated subsurface, identifying genetic mechanisms underlying their adaptation to stress.

bioRxiv · Feb 3, 2024 · PreprintMicrobiology

Mixed Waste Contamination Selects for a Mobile Genetic Element Population Enriched in Multiple Heavy Metal Resistance Genes

J. L. Goff, L. M. Lui, T. N. Nielsen, F. L. Poole, H. J. Smith, K. F. Walker, T. C. Hazen, M. W. Fields, A. P. Arkin, M. W. W. Adams

The paper analyzes MGEs from heavy metal contaminated and unimpacted subsurface regions, finding enriched HMRGs in contaminated areas associated with specific bacterial hosts.

bioRxiv · Nov 17, 2023Microbiology

Decomposing a San Francisco Estuary microbiome using long read metagenomics reveals species and species- and strain-level dominance from picoeukaryotes to viruses

L. M. Lui, T. N. Nielsen

This study decomposes a San Francisco Estuary metagenome using long-read sequencing to estimate microbial diversity and identify dominant species and strains across multiple taxa.

bioRxiv · Jun 30, 2023Microbiology

The Genetic Basis of phage susceptibility, cross-resistance and host-range in Salmonella

B. A. Adler, A. E. Kazakov, C. Zhong, H. Liu, E. Kutter, L. M. Lui, T. N. Nielsen, H. Carion, A. M. Deutschbauer, V. K. Mutalik, A. P. Arkin

This study identifies 301 host factors in Salmonella involved in phage resistance, reveals cross-resistance mechanisms between RpoS and RpoN, and shows additional constraints define phage host range.

Microbiology · Dec 1, 2021Peer-reviewedMicrobiology

Sustained ability of a natural microbial community to remove nitrate from groundwater

C. J. Paradis, J. I. Miller, J.-W. Moon, S. J. Spencer, L. M. Lui, J. D. Van Nostrand, D. Ning, A. D. Steen, L. D. McKay, A. P. Arkin, J. Zhou, E. J. Alm, T. C. Hazen

This study demonstrates that a natural microbial community can sustain nitrate removal from groundwater even after prolonged absence of an electron donor.

bioRxiv · May 27, 2021Ecology

Selective carbon sources influence the end-products of microbial nitrate respiration

H. K. Carlson, L. M. Lui, M. N. Price, A. E. Kazakov, A. V. Carr, J. V. Kuehl, T. K. Owens, T. Nielsen, A. P. Arkin, A. M. Deutschbauer

The paper investigates how different carbon sources affect the end-products of nitrate respiration in microbial communities from diverse environments.

bioRxiv · Nov 4, 2019Microbiology