Author

James Pai

QB3

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Chunyu WangiD· 1 shared Iain C. ClarkiD· 1 shared K. Christopher GarcíaiD· 1 shared Kevin M. JosliniD· 1 shared Liu Daisy LiuiD· 1 shared Rong MaiD· 1 shared Seung Won ShiniD· 1 shared Xinyu XiangiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperImmunology

Chunyu WangORCID

Mutual co-authors in cluster

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1 paper

Recent·Most cited

Functional Pairing of TCR-peptide-MHC Interactomes by Single-cell Clonal Expansion

Liu Daisy Liu, Seung Won Shin, Kevin M. Joslin, Chunyu Wang, James Pai, Rong Ma, Xinyu Xiang, Iain C. Clark, K. Christopher García

The paper develops LINC-seq to identify functional TCR-pMHC pairs by clonal expansion and deep mutational scanning, achieving high accuracy in recovering known cognate pairs and resolving co-evolutionary interactions.

bioRxiv · Aug 23, 2026 · PreprintImmunology