Author

Joël Frei

University of Bern

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Assay:imaging· 2 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Benjamin GrädeliD· 2 shared Lucien HinderlingiD· 2 shared Olivier C. PertziD· 2 shared Agne FrismantieneiD· 1 shared Alex Erich LandoltiD· 1 shared Ana StojiljkovićiD· 1 shared Benjamin D. TowbiniD· 1 shared Daniel RivelineiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersCell Biology

Benjamin GrädelORCID

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Author profile →

2 papers

Recent·Most cited

Teach your microscope how to print: Low-cost and rapid-iteration microfabrication for biology

Lucien Hinderling, Remo Hadorn, Moritz Kwasny, Joël Frei, Benjamin Grädel, Sacha Psalmon, Yannick Blum, Rémi Berthoz, Alex Erich Landolt, Benjamin D. Towbin, Daniel Riveline, Olivier C. Pertz

This paper introduces a low-cost microfabrication method using 3D printing and repurposed microscopes for biological applications, achieving micrometer precision without clean room infrastructure.

Lab on a Chip · Jan 1, 2025Peer-reviewedCell Biology

Convpaint - Universal framework for interactive pixel classification using pretrained neural networks

Lucien Hinderling, Guillaume Witz, Roman Schwob, Ana Stojiljković, Maciej Dobrzyński, Mykhailo Vladymyrov, Joël Frei, Benjamin Grädel, Agne Frismantiene, Olivier C. Pertz

Convpaint provides an interactive pixel classification framework using pretrained CNNs or ViTs, integrated into the napari ecosystem for versatile image processing.

bioRxiv · Sep 12, 2024 · PreprintBioinformatics