Author

Agne Frismantiene

University of BernORCID 0000-0002-2018-2986Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:imaging· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1

Frequent Co-Authors

Olivier C. PertziD· 3 shared Benjamin GrädeliD· 2 shared Lucien HinderlingiD· 2 shared Maciej DobrzyńskiiD· 2 shared Alex Erich LandoltiD· 1 shared Ana StojiljkovićiD· 1 shared Cedric ZahniiD· 1 shared Coralie DessaugesiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersCell Biology

Olivier C. PertzORCID

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3 papers

Recent·Most cited

Real-time feedback control microscopy for automation of optogenetic targeting

Lucien Hinderling, Alex Erich Landolt, Benjamin Grädel, Laurent Dubied, Cedric Zahni, Moritz Kwasny, Dario Bassi, Agne Frismantiene, Talley Lambert, Maciej Dobrzyński, Olivier C. Pertz

This paper introduces a real-time feedback system for optogenetic targeting, enabling automated and adaptive stimulation based on live cell behavior.

bioRxiv · Aug 17, 2025 · PreprintCell Biology

Convpaint - Universal framework for interactive pixel classification using pretrained neural networks

Lucien Hinderling, Guillaume Witz, Roman Schwob, Ana Stojiljković, Maciej Dobrzyński, Mykhailo Vladymyrov, Joël Frei, Benjamin Grädel, Agne Frismantiene, Olivier C. Pertz

Convpaint provides an interactive pixel classification framework using pretrained CNNs or ViTs, integrated into the napari ecosystem for versatile image processing.

bioRxiv · Sep 12, 2024 · PreprintBioinformatics

Optogenetic actuator/ERK biosensor circuits identify MAPK network nodes that shape ERK dynamics

Coralie Dessauges, Jan Mikelson, Maciej Dobrzyński, Marc‐Antoine Jacques, Agne Frismantiene, Paolo Armando Gagliardi, Mustafa Khammash, Olivier C. Pertz

The paper uses optogenetic actuator and ERK biosensor circuits to study MAPK network dynamics and identifies RSK2-mediated feedback as critical for ERK regulation and drug response.

Molecular Systems Biology · Jun 1, 2022Peer-reviewedSystems Biology