Author

Jonathan Gordon

University of VermontPrimary ORCID profile (0000-0002-8896-2057 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Jonathan GordoniD1 paper · Centre de Coopération Internationale en Recherche Agronomique pour le Développement

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:clustering· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Janet Lee SteiniD· 2 shared Adam GodzikiD· 1 shared Adam Officer· 1 shared Adriano ChiòiD· 1 shared Adrienne O’DonnelliD· 1 shared Agnieszka Kitlas GolińskaiD· 1 shared Alex G. Karanevich· 1 shared Alexander D. BorowskyiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersCancer Biology

Janet Lee SteinORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

lncRNA MANCR isoforms selectively mediate multiple levels of epigenomic and P53-responsive transcriptional control in triple negative breast cancer

Emory Pacht, Janine S. A. Warren, Rabail Hassan Toor, Karen C. Glass, Haley W. Greenyer, Andrew J. Fritz, Bodhisattwa Banerjee, Seth E. Frietze, Jane B. Lian, Jonathan Gordon, Gary S. Stein, Janet Lee Stein

The paper identifies MANCR isoforms' roles in epigenomic and P53-responsive transcriptional control in TNBC through computational and experimental methods.

bioRxiv · Apr 8, 2026 · PreprintCancer Biology

The breast pre-cancer atlas illustrates the molecular and micro-environmental diversity of ductal carcinoma in situ

Daniela Nachmanson, Adam Officer, Hidetoshi Mori, Jonathan Gordon, Mark Francis Evans, Joseph Steward, Huazhen Yao, Thomas J. O’Keefe, Farnaz Hasteh, Gary Stephen Stein, Kristen Jepsen, Donald L. Weaver, Gillian L. Hirst, Brian L. Sprague, Laura J. Esserman, , Olivier Harismendy

The paper creates a breast pre-cancer atlas by analyzing multiple micro-dissected regions from DCIS cases, revealing molecular and micro-environmental diversity and immune states associated with progression risk.

npj Breast Cancer · Jan 13, 2022Peer-reviewedGenomics

Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach

Robert Kueffner, Neta Zach, Maya Bronfeld, Raquel Norel, Nazem Atassi, Venkatachalapathy S. K. Balagurusamy, Barbara Di Camillo, Adriano Chiò, Merit Cudkowicz, Donna Eng Dillenberger, Javier Garcı́a-Garcı́a, Orla M. Hardiman, Bruce Hoff, Joshua Knight, Melanie L. Leitner, , Shihua Zhang

This study uses a crowdsourcing approach to stratify ALS patients, identifying four distinct clusters with unique predictors and improving outcome prediction.

Scientific Reports · Jan 24, 2019Peer-reviewedBioinformatics