Author

K. Fujikura

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

A. L. Kiemen· 2 shared D. Wirtz· 2 shared L. D. Wood· 2 shared P.-H. Wu· 2 shared Y. Nagano· 2 shared A. Bendia· 1 shared A. C. Jiang· 1 shared A. Deshpande· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersCancer Biology

A. L. Kiemen

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Three-dimensional assessments are necessary to determine the true, spatially-resolved composition of tissues

A. Forjaz, E. Vaz, V. M. Romero, S. Joshi, A. M. Braxton, A. C. Jiang, K. Fujikura, T. Cornish, S.-M. Hong, R. H. Hruban, P.-H. Wu, L. D. Wood, A. L. Kiemen, D. Wirtz

This study shows that 3D assessments are necessary to accurately determine tissue composition and neoplastic content, as 2D methods under-sample spatial heterogeneity.

bioRxiv · Dec 4, 2023Cancer Biology

PanIN and CAF Transitions in Pancreatic Carcinogenesis Revealed with Spatial Data Integration

A. T. F. Bell, J. T. Mitchell, A. L. Kiemen, K. Fujikura, H. Fedor, B. Gambichler, A. Deshpande, P.-H. Wu, D. N. Sidiropoulos, R. Erbe, J. Stern, R. Chan, S. Williams, J. M. Chell, J. W. Zimmerman, , L. T. Kagohara

This paper develops a new protocol for spatial transcriptomics analysis of FFPE PanIN specimens and integrates it with imaging and scRNA-seq to study the progression from PanIN to PDAC.

bioRxiv · Jul 16, 2022Cancer Biology

Massive occurrence of benthic plastic debris at the abyssal seafloor beneath the Kuroshio Extension, the North West Pacific

R. Nakajima, M. Tsuchiya, A. Yabuki, S. Masuda, T. Kitahashi, Y. Nagano, T. Ikuta, N. Isobe, H. Nakata, H. Ritchie, K. Oguri, S. Osafune, K. Kawamura, M. Suzukawa, T. Yamauchi, , K. Fujikura

The paper quantifies plastic debris on the abyssal seafloor beneath the Kuroshio Extension, finding high densities of single-use plastics, indicating the Northwest Pacific deep-sea basin is a major plastic reservoir.

bioRxiv · Nov 18, 2020Ecology

Bacterial diversity in deep-sea sediments under influence of asphalt seep at the Sao Paulo Plateau

L. L. Queiroz, A. Bendia, R. T. D. Duarte, D. A. d. Gracas, A. L. d. C. d. Silva, C. R. Nakayama, P. Y. Sumida, A. O. S. Lima, Y. Nagano, K. Fujikura, H. Kitazato, V. H. Pellizari

The paper investigates bacterial diversity in deep-sea sediments influenced by asphalt seeps using NGS, finding high abundance of Alphaproteobacteria and Acidimicrobiia possibly linked to hydrocarbon metabolism.

bioRxiv · Dec 2, 2019Microbiology