Author

K. R. Kalari

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 4

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:deep learning· 2 Research Focus:differential expression· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:cancer & tumor microenvironment· 1

Frequent Co-Authors

X. Tang· 3 shared L. Wang· 2 shared N. Kannan· 2 shared S. M. M. Aalam· 2 shared A. Al-jarrad· 1 shared A. Behfar· 1 shared A. Emad· 1 shared A. Moreno Aspitia· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersCancer Biology

X. Tang

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Author profile →

4 papers

Recent·Most cited

Microbiome Prevents Sudden Death Through Occult Cardiac Sub-micrometastasis in Mice

S. M. M. Aalam, X. Tang, H. PS, S. M. Salem, A. Al-jarrad, P. A. Noseworthy, A. Behfar, A. Sadanandam, K. R. Kalari, P. C. Kashyap, N. Kannan

The paper shows that gut microbiota prevents sudden cardiac death in mice by suppressing occult cardiac sub-micrometastases.

bioRxiv · Jul 3, 2023 · PreprintCancer Biology

Integration of multi-omics data shows downregulation of mismatch repair, purin, and tublin pathways in AR-negative triple-negative chemotherapy-resistant breast tumors

X. Tang, K. J. Thompson, K. R. Kalari, J. P. Sinnwell, V. Suman, P. T. Vedell, S. A. McLaughlin, D. W. Northfelt, A. Moreno Aspitia, R. J. Gray, J. M. Carter, R. Weinshilboum, L. Wang, J. C. Boughey, M. P. Goetz

The paper identifies a 17-gene signature from post-NAC biopsies that shows downregulation of immune and pathway genes associated with TNBC recurrence.

bioRxiv · May 16, 2022 · PreprintCancer Biology

Barcoded Competitive Clone-Initiating Cell (BC-CIC) Analysis Reveals Differences in Ovarian Cancer Cell Genotype and Niche Specific Clonal Fitness During Growth and Metastasis In Vivo

S. M. M. Aalam, X. Tang, J. Song, J. N. Bakkum-Gamez, M. E. Sherman, U. Ray, V. Shridhar, K. R. Kalari, D. J. H. F. Knapp, N. Kannan

This paper introduces a clonal tracking system using DNA barcoding and computational analysis to study metastatic clone fitness and genotype effects in ovarian cancer.

bioRxiv · Apr 8, 2021Cancer Biology

Knowledge-guided analysis of ‘omics’ data using the KnowEnG cloud platform

C. Blatti, A. Emad, M. J. Berry, L. Gatzke, M. Epstein, D. Lanier, P. Rizal, J. Ge, X. Liao, O. Sobh, M. Lambert, C. S. Post, J. Xiao, P. Groves, A. T. Epstein, , S. Sinha

KnowEnG is a cloud-based platform that provides tools for analyzing genomics data using knowledge-guided data-mining and machine learning, demonstrating its utility in cancer research.

bioRxiv · May 19, 2019Cancer Biology