Author

K. J. Thompson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioengineering· 1 Biophysics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Assay:cryo-EM· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

A. Kumar· 1 shared A. M. Siegel· 1 shared A. Moreno Aspitia· 1 shared A. R. Waldeck· 1 shared B. S. Sibert· 1 shared B. S. Stevenson· 1 shared B. W. Stamps· 1 shared C. C. Padilla· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 7 mutual co-author links

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1 shared paperBiophysics

A. Kumar

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Author profile →

5 papers

Recent·Most cited

Integration of multi-omics data shows downregulation of mismatch repair, purin, and tublin pathways in AR-negative triple-negative chemotherapy-resistant breast tumors

X. Tang, K. J. Thompson, K. R. Kalari, J. P. Sinnwell, V. Suman, P. T. Vedell, S. A. McLaughlin, D. W. Northfelt, A. Moreno Aspitia, R. J. Gray, J. M. Carter, R. Weinshilboum, L. Wang, J. C. Boughey, M. P. Goetz

The paper identifies a 17-gene signature from post-NAC biopsies that shows downregulation of immune and pathway genes associated with TNBC recurrence.

bioRxiv · May 16, 2022 · PreprintCancer Biology

Correlative cryogenic montage electron tomography for comprehensive in-situ whole-cell structural studies

J. E. Yang, M. R. Larson, B. S. Sibert, J. Y. Kim, D. Parrell, J. C. Sanchez, V. Pappas, A. Kumar, K. Cai, K. J. Thompson, E. R. Wright

This paper introduces tools for montage electron tomography to improve imaging of large fields of view in cryo-electron tomography while maintaining high-resolution structural information.

bioRxiv · Dec 31, 2021Biophysics

Low Cost Metabolic Fuel Sensor for On-Demand Personal Health and Fitness Tracking

L. M. Candell, R. W. Hoyt, J. M. Mahan, A. M. Siegel, R. M. Standley, K. J. Thompson, G. A. Shaw

The paper introduces a low-cost metabolic fuel sensor for personal tracking of energy expenditure and fuel substrate utilization to aid in health and fitness management.

bioRxiv · Feb 20, 2020 · PreprintBioengineering

Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes

M. S. Bray, J. Wu, C. C. Padilla, F. J. Stewart, D. A. Fowle, C. Henny, R. L. Simister, K. J. Thompson, S. A. Crowe, J. B. Glass

The paper identifies diverse putative e-pilin genes from environmental metagenomes using updated aromatic density thresholds, expanding known e-pili diversity in metal-rich ecosystems.

bioRxiv · Oct 15, 2019Microbiology

The Metabolic Capability and Phylogenetic Diversity of Mono Lake During a Bloom of the Eukaryotic Phototroph Picocystis strain ML

B. W. Stamps, H. S. Nunn, V. A. Petryshyn, R. S. Oremland, L. G. Miller, M. Rosen, K. W. Bauer, K. J. Thompson, E. M. Tookmanian, A. R. Waldeck, S. J. Lloyd, H. A. Johnson, B. S. Stevenson, W. Berelson, F. A. Corsetti, J. R. Spear

The paper investigates microbial dynamics during a natural algal bloom in Mono Lake, finding oxygenic photosynthesis occurs at depth despite anoxic conditions and reduced grazing pressure on Picocystis.

bioRxiv · May 30, 2018Microbiology