Author

Keith Sheppard

Jackson Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:imputation· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Gary A. ChurchilliD· 2 shared Alexander K. BergeriD· 1 shared Alexander Samir HatoumiD· 1 shared Anna LamoureuxiD· 1 shared Anuj SrivastavaiD· 1 shared Arpana Agrawal AiD· 1 shared Bahá El KassabyiD· 1 shared Beth A. SundbergiD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenetics

Gary A. ChurchillORCID

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2 papers

Recent·Most cited

GenomeMUSter mouse genetic variation service enables multi-trait, multi-population data integration and analyses

Robyn L. Ball, Molly A. Bogue, Hongping Liang, Anuj Srivastava, David George Ashbrook, Anna Lamoureux, Matthew W. Gerring, Alexander Samir Hatoum, Matthew J. Kim, Hao He, Jake Emerson, Alexander K. Berger, David O. Walton, Keith Sheppard, Bahá El Kassaby, , Elissa J. Chesler

GenomeMUSter integrates and harmonizes mouse genetic variation data across populations to enable multi-trait, multi-population analyses and improve variant-phenotype association studies.

Genome Research · Jan 1, 2024Peer-reviewedGenetics

Hierarchical Analysis of Multi-mapping RNA-Seq Reads Improves the Accuracy of Allele-specific Expression

Narayanan Raghupathy, Kwangbom Choi, Matthew J. Vincent, Glen Beane, Keith Sheppard, Steven C. Munger, Ron Korstanje, Fernando Pardo‐Manuel de Villena, Gary A. Churchill

EMASE improves ASE estimation by hierarchically allocating multi-mapping RNA-Seq reads, showing better performance than standard methods in simulations and detecting ASE in F1 hybrid mice.

Bioinformatics · Feb 9, 2018Peer-reviewedBioinformatics