Author

Glen Beane

Jackson Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Organism:human· 1 Organism:mouse· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Al Simons· 1 shared Anuj SrivastavaiD· 1 shared Carol J. BultiD· 1 shared Fernando Pardo‐Manuel de VillenaiD· 1 shared Gary A. ChurchilliD· 1 shared Grace A. StaffordiD· 1 shared Guruprasad AnandaiD· 1 shared Jeffrey H. ChuangiD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Al Simons

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Author profile →

2 papers

Recent·Most cited

Bioinformatics workflows for genomic analysis of tumors from Patient Derived Xenografts (PDX): challenges and guidelines

Xing Yi Woo, Anuj Srivastava, Joel H. Graber, Vinod Kumar Yadav, Vishal Sarsani, Al Simons, Glen Beane, Stephen C. Grubb, Guruprasad Ananda, Rangjiao Liu, Grace A. Stafford, Jeffrey H. Chuang, Susan D. Airhart, Radha Krishna Murthy Karuturi, Joshy George, Carol J. Bult

The paper develops bioinformatics workflows to analyze genomic data from patient-derived xenografts, addressing challenges like separating mouse and human reads and identifying somatic mutations without paired normal DNA.

BMC Medical Genomics · Jul 1, 2019Peer-reviewedBioinformatics

Hierarchical Analysis of Multi-mapping RNA-Seq Reads Improves the Accuracy of Allele-specific Expression

Narayanan Raghupathy, Kwangbom Choi, Matthew J. Vincent, Glen Beane, Keith Sheppard, Steven C. Munger, Ron Korstanje, Fernando Pardo‐Manuel de Villena, Gary A. Churchill

EMASE improves ASE estimation by hierarchically allocating multi-mapping RNA-Seq reads, showing better performance than standard methods in simulations and detecting ASE in F1 hybrid mice.

Bioinformatics · Feb 9, 2018Peer-reviewedBioinformatics