Author

Kevin Berg

University of Würzburg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1

Frequent Co-Authors

Florian ErhardiD· 3 shared Antoine‐Emmanuel SalibaiD· 2 shared Bhupesh Kumar PrustyiD· 2 shared Lars DölkeniD· 2 shared Manivel LodhaiD· 2 shared Thomas HennigiD· 2 shared Adam W. WhisnantiD· 1 shared Alexandra LusseriD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersBioinformatics

Florian ErhardORCID

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3 papers

Recent·Most cited

Respiratory syncytial virus load-dependent ciliated cell dedifferentiation and downregulation of immune response genes

Kevin Berg, Sibylle Haid, Ehsan Vafadarnejad, Arnaud Carpentier, Robert Geffers, Bettina Wiegmann, Antoine‐Emmanuel Saliba, Florian Erhard, Thomas Pietschmann

This study shows RSV causes ciliated cell dedifferentiation and downregulates immune response genes, with IRF1 remaining expressed and reducing viral replication.

bioRxiv · Aug 1, 2025 · PreprintMicrobiology

Identifying Modulators of Cellular Responses by Heterogeneity-sequencing

Kevin Berg, Lygeri Sakellaridi, Teresa Rummel, Thomas Hennig, Adam W. Whisnant, Manivel Lodha, Tobias Krammer, Christophe Toussaint, Katarzyna Szymanska-De Wijs, Yan Zheng, Bhupesh Kumar Prusty, Lars Dölken, Antoine‐Emmanuel Saliba, Florian Erhard

Heterogeneity-seq identifies causal factors driving heterogeneous cellular responses by combining single-cell RNA-seq with metabolic labeling and double machine learning.

bioRxiv · Oct 28, 2024 · PreprintBioinformatics

Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data

Kevin Berg, Manivel Lodha, Isabel Delazer, Karolina Bartosik, Yilliam Cruz Garcia, Thomas Hennig, Elmar Wolf, Lars Dölken, Alexandra Lusser, Bhupesh Kumar Prusty, Florian Erhard

The paper develops computational methods to correct 4sU-induced quantification bias in nucleotide conversion RNA-seq data by addressing mappability and reverse transcription efficiency issues.

Nucleic Acids Research · Feb 7, 2024Peer-reviewedBioinformatics