Author

Kongpan Li

University of Southern California

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:gene regulatory network inference· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:drug response / drug discovery· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:spatial transcriptomics· 2

Frequent Co-Authors

Jianhui Bai· 4 shared Zhipeng LuiD· 4 shared Jian‐Fu CheniD· 2 shared Minjie ZhangiD· 2 shared Willem A. VelemaiD· 2 shared Wilson H. LeeiD· 2 shared Aman SharmaiD· 1 shared Chengqing Yu· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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4 shared papersBioinformatics

Jianhui Bai

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Cell-type-resolved RNP topologies reveal dynamic structural mechanisms of splicing and therapeutic targets

Jianhui Bai, Kongpan Li, Wei Zhang, Minjie Zhang, Grant M. Shoffner, Willem A. Velema, Jianfu Chen, Feng Guo, Zhipeng Lu

The paper introduces SHARCLIP to map RNA-RNA, RNA-protein, and protein-protein contacts in cells, revealing structural mechanisms of splicing and therapeutic targets.

bioRxiv · May 18, 2026 · PreprintMolecular Biology

CRIS: A Centralized Resource for High-Quality RNA Structure and Interaction Data in the AI Era

Wilson H. Lee, Cynthia Dharmawan, Kongpan Li, Jianhui Bai, Pratham Solanki, Aman Sharma, Minjie Zhang, Zhipeng Lu

CRIS provides a centralized resource for high-quality RNA structure and interaction data with standardized workflows and tools to support reproducibility and machine learning applications.

bioRxiv · May 5, 2025 · PreprintBioinformatics

Classification and clustering of RNA crosslink-ligation data reveal complex structures and homodimers

Minjie Zhang, Irena Fischer-Hwang, Kongpan Li, Jianhui Bai, Jian‐Fu Chen, Tsachy Weissman, James Zou, Zhipeng Lu

The paper introduces computational tools to analyze crosslink-ligation RNA data, revealing new RNA structures and homodimers.

Genome Research · Mar 24, 2022Peer-reviewedBioinformatics

Optimized photochemistry and enzymology enable efficient analysis of RNA structures and interactions in cells and virus infections

Minjie Zhang, Kongpan Li, Willem A. Velema, Jianhui Bai, Chengqing Yu, Ryan Van Damme, Wilson H. Lee, Maia L. Corpuz, Jian‐Fu Chen, Zhipeng Lu

The paper introduces PARIS2, a method for efficiently analyzing RNA structures and interactions in cells, revealing new insights into viral RNA conformations and translation mechanisms.

bioRxiv · Apr 30, 2020 · PreprintGenomics