Author

Kritika Karri

Boston University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Systems Biology· 2 Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:mouse· 4 Assay:scRNA-seq· 4 Approach:statistical model· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

David J. WaxmaniD· 4 shared Maxim PyatkoviD· 2 shared Anthony N. FedericoiD· 1 shared Chad N. BrockeriD· 1 shared Christine N. Goldfarb· 1 shared Daisuke AibaraiD· 1 shared Dileep KishoreiD· 1 shared Donghwan KimiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersSystems Biology

David J. WaxmanORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Single Nucleus MultiOmics Links Novel Transcription Factor Motifs to Murine Hepatic Sex Differences in Chromatin Accessibility and Metabolic Dysfunction-Associated Steatotic Liver Disease

Kritika Karri, Ting-Ya Chang, Maxim Pyatkov, Shashi Gandhi, Trevor Siggers, David J. Waxman

This study uses single-nucleus multi-omics to identify sex-specific transcription factor motifs linked to chromatin accessibility and MASLD in mouse liver.

bioRxiv · Oct 31, 2025 · PreprintGenomics

Dysregulation of murine long non-coding single cell transcriptome in non-alcoholic steatohepatitis and liver fibrosis

Kritika Karri, David J. Waxman

The paper identifies dysregulated lncRNAs in mouse liver disease using single-cell RNA-seq and links them to biological pathways and potential therapeutic targets.

RNA · Apr 4, 2023Peer-reviewedSystems Biology

Interplay between murine sex-biased gene expression and hepatic zonation revealed by single nucleus RNA sequencing

Christine N. Goldfarb, Kritika Karri, Maxim Pyatkov, David J. Waxman

This study uses single nucleus RNA sequencing to analyze sex-biased gene expression and zonation in mouse liver, revealing cell type-specific patterns and effects of GH and xenobiotic exposure.

Endocrinology · May 4, 2022Peer-reviewedSystems Biology

Long non-coding RNA Gm15441 attenuates hepatic inflammasome activation in response to metabolic stress

Chad N. Brocker, Donghwan Kim, Tisha Melia, Kritika Karri, Thomas J. Velenosi, Shogo Takahashi, Daisuke Aibara, Jessica A. Bonzo, Moshe Levi, David J. Waxman, Frank J. Gonzalez

The paper shows that PPARA upregulates Gm15441, which suppresses TXNIP and reduces NLRP3 inflammasome activation during metabolic stress.

Nature Communications · Nov 17, 2020Peer-reviewedMolecular Biology

Pipeliner: A Nextflow-based framework for the definition of sequencing data processing pipelines

Anthony N. Federico, Tanya T. Karagiannis, Kritika Karri, Dileep Kishore, Yusuke Koga, Joshua David Campbell, Stefano Monti

Pipeliner provides a Nextflow-based framework for creating flexible and reproducible sequencing data processing pipelines, supporting bulk RNA-seq, scRNA-seq, and DGE data.

Frontiers in Genetics · Jun 28, 2019Peer-reviewedBioinformatics