Author

Lucia Ramirez

Stanford University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Evolutionary Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Organism:chicken / avian· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Michael P. SnyderiD· 2 shared Adrienne B. NarroweiD· 1 shared Alekhya Vadlakonda· 1 shared Alexander J. ProbstiD· 1 shared Alexander SczyrbaiD· 1 shared Alice C. FaniD· 1 shared Alicia A. Erwin· 1 shared Ananya Vadlakonda· 1 shared

Activity by Year

2022-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenetics

Michael P. SnyderORCID

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Author profile →

5 papers

Recent·Most cited

Comprehensive Characterization of the Promoter Proximal Proteome of Single Copy Locus FOXP2

Tim M.G. MacKenzie, Lucia Ramirez, Ruiqi Jian, Lihua Jiang, Michael P. Snyder

The paper characterizes the promoter proximal proteome of FOXP2 using proximity labeling and mass spectrometry, identifying 373 enriched proteins and validating IRF2BP2 as a negative regulator of FOXP2 transcription.

Molecular & Cellular Proteomics · Apr 21, 2026Peer-reviewedGenetics

Mixed outcomes in recombination rates after domestication: Revisiting theory and data

Madeline G. Bursell, Manav Rohilla, Lucia Ramirez, Yuhuan Cheng, Enrique J. Schwarzkopf, Rafael F. Guerrero, Caiti Smukowski Heil

The paper examines recombination rate changes in domesticated species compared to their wild ancestors, finding mixed results across chicken, sheep, and goats.

Molecular Ecology · Apr 24, 2025Peer-reviewedEvolutionary Biology

Sex differences in early and term placenta are conserved in adult tissues

Kimberly C. Olney, Seema B. Plaisier, Tanya N. Phung, Michelle Silasi, Lauren E. Perley, Jane O’Bryan, Lucia Ramirez, Harvey J. Kliman, Melissa A. Wilson

The paper identifies sex differences in gene expression in placenta at different pregnancy stages and shows these differences are conserved in adult tissues.

Biology of Sex Differences · Dec 22, 2022Peer-reviewedGenomics

A five-fold expansion of the global RNA virome reveals multiple new clades of RNA bacteriophages

Uri Neri, Yuri I. Wolf, Simon Roux, Antônio Pedro Camargo, Benjamin Lee, Darius Kazlauskas, I. Min Chen, Natalia Ivanova, Lisa Zeigler Allen, David Páez-Espino, Donald A. Bryant, Devaki Bhaya, Adrienne B. Narrowe, Alexander J. Probst, Alexander Sczyrba, , Vincent J. Denef

The paper expands the global RNA virome by five-fold, identifying new clades of RNA bacteriophages and revealing novel virus-host interactions.

Cell · Sep 28, 2022Peer-reviewedGenomics

A genome-wide atlas of recurrent repeat expansions in human cancer

Graham Scott Erwin, Gamze Gürsoy, Rashid Al-Abri, Ashwini Suriyaprakash, Egor Dolzhenko, Kevin Zhu, Christian R. Hoerner, Shannon M. White, Lucia Ramirez, Ananya Vadlakonda, Alekhya Vadlakonda, Konor von Kraut, Julia Park, Charlotte M. Brannon, Daniel Arango Sumano, , Michael P. Snyder

The paper identifies recurrent repeat expansions in cancer genomes, showing their association with gene regulation and demonstrating their therapeutic targeting potential.

bioRxiv · Aug 24, 2022 · PreprintGenomics