Author

M. B. Doud

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 3 Microbiology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:proteomics· 3 Approach:deep learning· 2 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Approach:statistical model· 2 Organism:virus· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

J. D. Bloom· 4 shared J. M. Lee· 2 shared A. Gupta· 1 shared C. A. De La Fuente· 1 shared J. Huddleston· 1 shared J. R. Meyer· 1 shared K. A. Hooper· 1 shared N. C. Wu· 1 shared

Activity by Year

2016-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersEvolutionary Biology

J. D. Bloom

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation

M. B. Doud, A. Gupta, V. Li, S. J. Medina, C. A. De La Fuente, J. R. Meyer

This study shows how fitness landscapes change during adaptation, enabling speciation by opening new adaptive pathways in bacteriophage lambda.

bioRxiv · Aug 11, 2023 · PreprintEvolutionary Biology

Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants

J. M. Lee, J. Huddleston, M. B. Doud, K. A. Hooper, N. C. Wu, T. Bedford, J. D. Bloom

The paper experimentally measures the effects of all single amino-acid mutations in H3N2 influenza HA on viral growth and shows their correlation with evolutionary success in natural lineages.

bioRxiv · Apr 10, 2018Evolutionary Biology

Quantifying the effects of single mutations on viral escape from broad and narrow antibodies to an H1 influenza hemagglutinin

M. B. Doud, J. M. Lee, J. D. Bloom

The paper identifies and quantifies single amino-acid mutations that confer resistance to broad and narrow antibodies targeting H1 influenza hemagglutinin.

bioRxiv · Jan 22, 2018Microbiology

phydms: Software for phylogenetic analyses informed by deep mutational scanning

S. K. Hilton, M. B. Doud, J. D. Bloom

phydms enables efficient phylogenetic analyses using substitution models informed by deep mutational scanning, allowing comparison of lab and natural selection pressures.

bioRxiv · Mar 29, 2017Evolutionary Biology

Complete mapping of viral escape from neutralizing antibodies

M. B. Doud, S. E. Hensley, J. D. Bloom

This study maps viral escape mutations from neutralizing antibodies by creating all replication-competent variants and using deep sequencing to identify enriched mutations.

bioRxiv · Nov 9, 2016Microbiology