Author

Marcus R. Morgan

Oxford University Hospitals NHS Trust

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetic & Genomic Medicine· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1

Frequent Co-Authors

Ann Sarah WalkeriD· 2 shared Derrick W. CrookiD· 2 shared James KavanaghiD· 2 shared Nicole E StoesseriD· 2 shared Samuel LipworthiD· 2 shared Sarah J OakleyiD· 2 shared William MatlockiD· 2 shared Ali VaughaniD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

Ann Sarah WalkerORCID

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Author profile →

3 papers

Recent·Most cited

E. coli phylogeny drives co-amoxiclav resistance through variable expression of blaTEM-1

William Matlock, Gillian Rodger, Emma Pritchard, Matthew Colpus, Natalia Kapel, Lucinda K. Barrett, Marcus R. Morgan, Sarah J Oakley, Katie L. Hopkins, Aysha Roohi, Drosos E. Karageorgopoulos, Matthew B. Avison, Ann Sarah Walker, Samuel Lipworth, Nicole E Stoesser

The paper shows that E. coli phylogeny influences blaTEM-1 expression and co-amoxiclav resistance through lineage-specific regulatory differences.

Nature Communications · Sep 30, 2025Peer-reviewedMicrobiology

Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK

William Matlock, Samuel Lipworth, Kevin Chau, Manal AbuOun, Leanne Barker, James Kavanagh, Monique Ingrid Andersson, Sarah J Oakley, Marcus R. Morgan, Derrick W. Crook, Daniel S. Read, Muna F. Anjum, Liam P. Shaw, Nicole E Stoesser

The paper investigates plasmid sharing among Enterobacterales in human infections, livestock, wastewater, and waterways in Oxfordshire, finding shared plasmid backbones and rapid accessory gene changes across niches.

eLife · Mar 24, 2023Peer-reviewedGenomics

Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission

Yifei Xu, Kuiama S. Lewandowski, Louise Downs, James Kavanagh, Thomas Hender, Sheila Lumley, Katie JM Jeffery, Dona Foster, Nicholas D. Sanderson, Ali Vaughan, Marcus R. Morgan, Richard Vipond, Miles W. Carroll, Tim Peto, Derrick W. Crook, , Steven T. Pullan

Eurosurveillance · Jul 8, 2021Peer-reviewedGenetic & Genomic Medicine