Author

Marie Shi

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 3

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:imaging· 2 Research Focus:cell-cell communication· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Carlo CondelloiD· 2 shared Christoffer D. Caro· 2 shared Hyunjun YangiD· 2 shared Atsushi TengeijiiD· 1 shared Colt W Crain· 1 shared Daniel R. SouthworthiD· 1 shared Duygu KuzumiD· 1 shared Elizabeth K. KharitonovaiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersNeuroscience

Carlo CondelloORCID

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Author profile →

3 papers

Recent·Most cited

Flexible 3D multimodal organoid interface reveals functional subnetworks and coordinated circuit activity in cortical organoids

Madison N. Wilson, Elizabeth K. Kharitonova, Joseph Yeh, Joann Lee, Shadee Hemaidan, Samuel Essig, Marie Shi, Colt W Crain, Mehrdad Ramezani, Fengyi Sun, Teng Zhou, Ikbal Surucu, Farzad Mortazavi, Ertugrul Cubukcu, Martin Thunemann, , Duygu Kuzum

This paper introduces INFORM, a multimodal interface for cortical organoids that enables long-term recordings and modulation of neural activity, revealing functional subnetworks and inhibitory signaling.

bioRxiv · Oct 8, 2026 · PreprintNeuroscience

Cryo-EM Structures Reveal Tau Filaments from Down Syndrome Adopt Alzheimer's Disease Fold

Ujjayini Ghosh, Eric Tse, Hyunjun Yang, Marie Shi, Christoffer D. Caro, Feng Wang, Gregory E. Merz, Stanley B. Prusiner, Daniel R. Southworth, Carlo Condello

The paper uses cryo-EM to show that tau filaments in Down syndrome share the same structure as those in Alzheimer's disease.

Acta Neuropathologica Communications · Jun 12, 2024Peer-reviewedNeuroscience

EMBER multi-dimensional spectral microscopy enables quantitative determination of disease- and cell-specific amyloid strains

Hyunjun Yang, Peng Yuan, Yibing Wu, Marie Shi, Christoffer D. Caro, Atsushi Tengeiji, Shigeo Yamanoi, Masahiro Inoue, William F. DeGrado, Carlo Condello

The paper introduces EMBER, a spectral imaging method using machine learning to identify amyloid strains in neurodegenerative diseases.

Proceedings of the National Academy of Sciences · Mar 16, 2023Peer-reviewedNeuroscience