Author

Monika Mohenska

Australian Regenerative Medicine Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:spatial transcriptomics· 3 Research Focus:cell type annotation· 2 Organism:human· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Approach:contrastive learning· 1

Frequent Co-Authors

Jose Maria PoloiD· 4 shared Anja S. KnauppiD· 2 shared Fernando Jaime RosselloiD· 2 shared Adrienne E. SullivaniD· 1 shared Alex TokolyiiD· 1 shared Andrew PerryiD· 1 shared Anna Pascual ReguantiD· 1 shared B. Kate DredgeiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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4 shared papersGenomics

Jose Maria PoloORCID

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Author profile →

4 papers

Recent·Most cited

DOMINO: graph diffusion learning identifies spatial domain structures with enhanced accuracy and scalability

Pan Jia, Na Liu, Zixu Ran, Suzanne Maiolo, Tianjun Zhang, Monika Mohenska, Xudong Guo, Cong Wang, Eugene Haydn Walters, Carmela Ricciardelli, Noor A. Lokman, Rebecca Morrow, Martin Klaus Oehler, Jose Maria Polo, Ning Liu, Fuyi Li

DOMINO identifies spatial domains in spatial transcriptomic data with improved accuracy and scalability, outperforming existing methods on large datasets.

bioRxiv · Jun 17, 2026 · PreprintBioinformatics

STAMP: Single-Cell Transcriptomics Analysis and Multimodal Profiling through Imaging

Emanuele Pitino, Anna Pascual Reguant, Felipe Segato Dezem, Kellie Wise, Irepan Salvador‐Martínez, Helena Lucia Crowell, Maycon Marção, Max Ruiz, Elise T. Courtois, William F. Flynn, Santhosh K. Sivajothi, Emily C. Soja, Ginevra Caratù, German Atzin Mora-Roldan, B. Kate Dredge, , Luciano Gastón Martelotto

STAMP enables low-cost, high-throughput single-cell analysis by integrating transcriptomics and proteomics imaging, supporting both single and multimodal profiling of diverse cell types.

Cell · Jun 17, 2025Peer-reviewedGenomics

3D-Cardiomics: A spatial transcriptional atlas of the mammalian heart

Monika Mohenska, Nathalia M. Tan, Alex Tokolyi, Milena Bastos Furtado, Mauro W. Costa, Andrew Perry, Jessica Hatwell-Humble, Karel van Duijvenboden, Hieu Tri Nim, Yuan M.M. Ji, Natalie Charitakis, Denis Bienroth, Francesca Bolk, Celine J. Vivien, Anja S. Knaupp, , Mirana Ramialison

This paper develops a 3D spatial transcriptomic atlas of the mouse heart and provides a web tool for analysis and visualization.

Journal of Molecular and Cellular Cardiology · Oct 6, 2021Peer-reviewedSystems Biology

TINC - a method to dissect transcriptional complexes at single locus resolution - reveals novel Nanog regulators in mouse embryonic stem cells

Anja S. Knaupp, Monika Mohenska, Michael R. Larcombe, Ethan Ford, SM Lim, Ka Wai Wong, Jinxin Chen, Jaber Firas, Cheng Huang, Xiangqiong Liu, Thu Anh Nguyen, YBY Sun, M L Holmes, P Tripathi, Fernando Jaime Rossello, , Jose Maria Polo

bioRxiv · Apr 3, 2020 · PreprintGenomics