Author

Morten Seirup

University of Wisconsin–Madison

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Ron M. StewartiD· 2 shared Alireza Fotuhi SiahpiraniiD· 1 shared Angela L. Elwell· 1 shared Bret M. DuffiniD· 1 shared Christina M. KendziorskiiD· 1 shared Christina M. Shafer· 1 shared Deborah A. ChasmaniD· 1 shared Hadley Browder· 1 shared

Activity by Year

2020-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Ron M. StewartORCID

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Author profile →

2 papers

Recent·Most cited

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

Morten Seirup, Li‐Fang Chu, Srikumar Sengupta, Ning Leng, Hadley Browder, Kevin Kapadia, Christina M. Shafer, Bret M. Duffin, Angela L. Elwell, Jennifer M. Bolin, Scott Allen Swanson, Ron M. Stewart, Christina M. Kendziorski, James Alexander Thomson, Rhonda L. Bacher

This study evaluates the reproducibility of spatial ordering analysis across different single-cell RNA-seq protocols, finding high reproducibility despite differences in sequencing depth and computational methods.

PLoS ONE · Sep 28, 2020Peer-reviewedGenomics

Dynamic regulatory module networks for inference of cell type-specific transcriptional networks

Alireza Fotuhi Siahpirani, Sara Knaack, Deborah A. Chasman, Morten Seirup, Rupa Sridharan, Ron M. Stewart, James Livingston Thomson, Sushmita Roy

This paper introduces DRMN, a method to infer cell type-specific transcriptional networks from multi-omic data, showing it accurately predicts cis-regulators and models network dynamics.

bioRxiv · Jul 18, 2020 · PreprintBioinformatics