Author

Kevin Kapadia

University of Florida

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Hadley Browder· 2 shared Rhonda L. BacheriD· 2 shared Alberto RivaiD· 1 shared Angela L. Elwell· 1 shared Bret M. DuffiniD· 1 shared Carolina E Pardo· 1 shared Christina M. KendziorskiiD· 1 shared Christina M. Shafer· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Hadley Browder

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2 papers

Recent·Most cited

methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data

Parker Knight, Marie‐Pierre L. Gauthier, Carolina E Pardo, Russell P. Darst, Kevin Kapadia, Hadley Browder, Eliza Morton, Alberto Riva, Michael P. Kladde, Rhonda L. Bacher

The paper introduces methylscaper, an R/Shiny app for visualizing DNA methylation and nucleosome occupancy in single-molecule and single-cell data, showing its ability to identify biologically relevant chromatin features.

Bioinformatics · Jun 11, 2021Peer-reviewedBioinformatics

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

Morten Seirup, Li‐Fang Chu, Srikumar Sengupta, Ning Leng, Hadley Browder, Kevin Kapadia, Christina M. Shafer, Bret M. Duffin, Angela L. Elwell, Jennifer M. Bolin, Scott Allen Swanson, Ron M. Stewart, Christina M. Kendziorski, James Alexander Thomson, Rhonda L. Bacher

This study evaluates the reproducibility of spatial ordering analysis across different single-cell RNA-seq protocols, finding high reproducibility despite differences in sequencing depth and computational methods.

PLoS ONE · Sep 28, 2020Peer-reviewedGenomics