Author

N. F. Neff

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Assay:metagenomics· 3 Organism:mouse· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

A. McGeever· 2 shared S. R. Quake· 2 shared A. Aranda-Diaz· 1 shared A. Bennett· 1 shared A. Kuchta· 1 shared A. Lyden· 1 shared A. O. Pisco· 1 shared B. D. Merrill· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersCell Biology

A. McGeever

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Author profile →

4 papers

Recent·Most cited

A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse

The Tabula Muris Consortium, A. O. Pisco, A. McGeever, N. Schaum, J. Karkanias, N. F. Neff, S. Darmanis, T. Wyss-Coray, S. R. Quake

This study creates a single cell transcriptomic atlas of aging mouse tissues, identifying age-related changes in cell types and organ composition across 23 tissues.

bioRxiv · Feb 21, 2020 · PreprintCell Biology

Recovery of the gut microbiota after antibiotics depends on host diet and environmental reservoirs

K. M. Ng, A. Aranda-Diaz, C. Tropini, M. R. Frankel, W. W. Van Treuren, C. O'Laughlin, B. D. Merrill, F. B. Yu, K. M. Pruss, R. A. Oliveira, S. K. Higginbottom, N. F. Neff, M. A. Fischbach, K. B. Xavier, J. L. Sonnenburg, K. C. Huang

The paper investigates how gut microbiota recovers after antibiotics, showing diet and environmental factors influence resilience and recovery patterns.

bioRxiv · Aug 8, 2019Microbiology

FLASH: A next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences

J. Quan, C. Langelier, A. Kuchta, J. Batson, N. Teyssier, A. Lyden, S. Caldera, A. McGeever, B. Dimitrov, R. King, J. Wilheim, M. Murphy, L. Pesce Ares, K. A. Travisano, R. Sit, , E. D. Crawford

FLASH is a CRISPR-based diagnostic method that enhances detection of low-abundance antimicrobial resistance sequences in metagenomic data.

bioRxiv · May 12, 2019Microbiology

Cell-free DNA Reveals Potential Zoonotic Reservoirs in Non-Human Primates

M. Kowarsky, I. De Vlaminck, J. Okamoto, N. F. Neff, M. LeBreton, J. Nwobegabay, U. Tamoufe, J. D. Ledoux, B. Tafon, J. Kiyang, K. Saylors, N. D. Wolfe, S. R. Quake

The paper uses cell-free DNA sequencing to identify microbial taxa in non-human primates, revealing potential zoonotic pathogens and their association with host species.

bioRxiv · Nov 29, 2018 · PreprintMicrobiology