Author

Najia Bouaddouch

McGill Genome Centre

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:long-read sequencing· 1 Assay:proteomics· 1 Organism:rat· 1

Frequent Co-Authors

Aldo Hernández-CorchadoiD· 2 shared Hamed Shateri NajafabadiiD· 2 shared Ali Poursina· 1 shared Ali Saberi· 1 shared Amin EmadiD· 1 shared Arsham Mikaeili NaminiiD· 1 shared Hani GoodarziiD· 1 shared Jewel T-Y Li· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersNeuroscience

Aldo Hernández-CorchadoORCID

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2 papers

Recent·Most cited

Non-canonical ribosome organization enables translation stalling in neuronal RNA granules.

Jingyu Sun, Lily Drever, Laura Bohorquez, Najia Bouaddouch, Jewel T-Y Li, Thibault Legal, Aldo Hernández-Corchado, Shuaiqi Guo, Khanh Huy Bui, Hamed Shateri Najafabadi, Wayne S. Sossin, Joaquı́n Ortega

The paper investigates ribosome clusters in neuronal RNA granules, finding they contain stalled ribosomes and unique 3D structures that avoid quality-control mechanisms.

bioRxiv · Jul 22, 2026 · PreprintNeuroscience

A long context RNA foundation model for predicting transcriptome architecture

Ali Saberi, Man Hung Choi, Shaopu Zhou, Mohsen Naghipourfar, Simai Wang, Aldo Hernández-Corchado, Rohan Dandage, Najia Bouaddouch, Arsham Mikaeili Namini, Ali Poursina, Vijay Ramani, Amin Emad, Hamed Shateri Najafabadi, Hani Goodarzi

The paper introduces Mach-1, an RNA foundation model that predicts transcriptome architecture from DNA sequence, validated through experimental perturbations and CRISPR editing.

bioRxiv · Aug 26, 2024 · PreprintBioinformatics