Pooled CRISPR Inverse PCR sequencing (PCIP-seq): simultaneous sequencing of retroviral insertion points and the integrated provirus with long reads
Maria Artesi, Vincent Hahaut, Fereshteh Ashrafi, Ambroise Marçais, Olivier Hermine, Philip Griebel, Natasa Arsic, Frank J.U.M. van der Meer, Arsène Burny, D Bron, Carole Charlier, Michel Georges, Anne Van den Broeke, Keith Durkin
PCIP-seq uses long-read sequencing to simultaneously identify retroviral insertion sites and their integrated proviruses, revealing SNPs, structural variants, and viral evolution.
bioRxiv · Dec 6, 2019 · PreprintGenomics