Author

Ngoc Tran

Center for Infectious Disease Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1 Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Alexei A. KoulakoviD· 1 shared An Nguyen· 1 shared Anastasiia MasaltsevaiD· 1 shared Anshul Kundaje· 1 shared Bart L. StakeriD· 1 shared Cecilie Boysen· 1 shared Chad J. MungeriD· 1 shared Chelsea Agyei· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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1 shared paperNeuroscience

Alexei A. KoulakovORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Mapping the regulatory wiring of endothelial cell differentiation reveals a critical role for Hippo mechanosignaling

Tri C. Nguyen, Hunter D. King, Dulguun Amgalan, Olga Pushkarev, Yanyan Alexandra Mo, Chad J. Munger, Chloe McCreery, Revant Gupta, Tony Zeng, Ronghao Zhou, Stephanie D. Conley, Surya Prakash Rao Batta, Maya U. Sheth, Eugenio Mattei, Anastasiia Masaltseva, , Jesse M. Engreitz

The paper maps gene regulators of endothelial cell differentiation using CRISPR and single-cell RNA-seq, identifying Hippo mechanosignaling as critical for endothelial identity.

bioRxiv · Nov 5, 2026 · PreprintGenomics

Structural Basis of Glycolytic Control in Trypanosoma cruzi: Insights from Enolase and PGI

Kenneth Austin, Vincent A Obakachi, Florence Lisa Muzenda, Marakiya T. Moetlediwa, Chelsea Agyei, Timothy Craig, Jan A. Abendroth, Mary Nguyen, Ngoc Tran, Bart L. Staker, Tom Edwards, Sandhya Subramanian, Peter John Myler, Tawanda Zininga, Krishna Kuben Govender, Graham Chakafana

The paper reports high-resolution structures of T. cruzi glycolytic enzymes and identifies potential inhibitors through structural analysis and virtual screening.

bioRxiv · Jan 15, 2026 · PreprintBiochemistry

BBrowser: Making single-cell data easily accessible

Tri Le, Tan Phan, Minh Pham, Dat Tran, Loc Lam, Ngoc Tung Nguyen, Thao Truong, Hy Vuong, Tam Luu, Nam Phung, Ngan Pham, Trang Thi Thu Nguyen, Oanh Minh Pham, An Nguyen, Huy Tan Nguyen, , Son Truong Pham

A downloadable application pairs a curated single-cell database with a big-data analytics layer and a visualisation module for exploring single-cell omics data.

bioRxiv · Dec 11, 2020 · PreprintBioinformatics

DeepNose: Using artificial neural networks to represent the space of odorants

Ngoc Tran, Daniel R. Kepple, Sergey A. Shuvaev, Alexei A. Koulakov

This paper trains an autoencoder to represent odorant chemical space and uses it to predict human olfactory percepts with accuracy comparable to traditional molecular descriptors.

bioRxiv · Nov 7, 2018 · PreprintNeuroscience