Author

Nianping Liu

Lucile Packard Children's HospitalPrimary ORCID profile (0000-0002-9044-6457 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Nianping LiuiD2 papers · University of Science and Technology of China

Biology Disciplines

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Bioinformatics· 2 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Xiaojie QiuiD· 3 shared Miao CuiiD· 2 shared Weize XuiD· 2 shared Alice Y. TingiD· 1 shared Andrew G. XueiD· 1 shared Bo CaiiD· 1 shared Bogdan BintuiD· 1 shared Christopher Zou· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersBioinformatics

Xiaojie QiuORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Bio-Babel: autonomous cross-language reconstruction of agent-ready computational biology ecosystems

Nianping Liu, Xuanzhi Chen, Miao Cui, Xiaoying Liao, Xiaoke Song, Sairam Pantham, Weize Xu, Xiaojie Qiu

Bio-Babel reconstructs computational biology software in new ecosystems, enabling agent-callable usage and revealing pancreatic differentiation defects under SWI/SNF loss.

bioRxiv · Sep 3, 2026 · PreprintBioinformatics

Subcellular transcriptome sequencing with single cell APEX-seq identifies regulators of cell-cell interactions

Andrew G. Xue, Bo Cai, Qian Xue, Nianping Liu, Xiaojie Qiu, Rogelio Antonio Hernández-López, Alice Y. Ting

This paper introduces scAPEX-seq, a method to map subcellular transcriptomes, and identifies CTSW as a regulator of CAR T cell function in tumor co-cultures.

bioRxiv · Mar 18, 2026 · PreprintCell Biology

PantheonOS: An Evolvable Multi-Agent Framework for Automatic Genomics Discovery

Weize Xu, Erwin Poussi, Quan Zhong, Zehua Zeng, Christopher Zou, Xuehai Wang, Yifan Lu, Miao Cui, Daiji Okamura, Cinlong Huang, Jiayuan Ding, Zhe Zhao, Yuheng Yang, Xinhai Pan, Varshini Vijay, , Xiaojie Qiu

PantheonOS introduces a multi-agent framework for automated genomics analysis, achieving super-human performance in batch correction and gene panel selection across diverse biological tasks.

bioRxiv · Feb 27, 2026 · PreprintBioinformatics