Author

Quan Zhong

Huazhong Agricultural UniversityPrimary ORCID profile (0000-0003-2910-5597 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Quan ZhongiD2 papers · Harvard University

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:clustering· 2 Research Focus:dimensionality reduction· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Organism:mouse· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Weize XuiD· 3 shared Bogdan BintuiD· 1 shared Christopher Zou· 1 shared Chunhui HouiD· 1 shared Cinlong Huang· 1 shared Colin KerniD· 1 shared Da LiniD· 1 shared Daiji OkamuraiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersBioinformatics

Weize XuORCID

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4 papers

Recent·Most cited

U-Chrom: a unified framework for single-cell and spatial 3D genome data

Lu Zhang, Yu Chen, Quan Zhong, Weize Xu

U-Chrom provides a unified framework for analyzing single-cell and spatial 3D genome data, showing consistent cell-type differences across assays.

bioRxiv · Oct 19, 2026 · PreprintBioinformatics

PantheonOS: An Evolvable Multi-Agent Framework for Automatic Genomics Discovery

Weize Xu, Erwin Poussi, Quan Zhong, Zehua Zeng, Christopher Zou, Xuehai Wang, Yifan Lu, Miao Cui, Daiji Okamura, Cinlong Huang, Jiayuan Ding, Zhe Zhao, Yuheng Yang, Xinhai Pan, Varshini Vijay, , Xiaojie Qiu

PantheonOS introduces a multi-agent framework for automated genomics analysis, achieving super-human performance in batch correction and gene panel selection across diverse biological tasks.

bioRxiv · Feb 27, 2026 · PreprintBioinformatics

CoolBox: A flexible toolkit for visual analysis of genomics data

Weize Xu, Quan Zhong, Da Lin, Ya Zuo, Jinxia Dai, Guoliang Li, Gang Cao

CoolBox is a flexible open-source toolkit for visualizing genomics data, compatible with Python, offering customization and integration with Jupyter and web browsers.

BMC Bioinformatics · Oct 10, 2021Peer-reviewedBioinformatics

Extensive Chromatin Structure-Function Association Revealed by Accurate Compartmentalization Characterization

Zi Wen, Weihan Zhang, Quan Zhong, Jinsheng Xu, Chunhui Hou, Zhaohui Steve Qin, Li Li

The paper introduces MOSAIC, a method to detect chromatin compartments, revealing micro-compartments that improve understanding of chromatin structure-function relationships.

bioRxiv · Sep 17, 2021 · PreprintBioinformatics