Genome-wide protein-DNA interaction site mapping using a double strand DNA-specific cytosine deaminase
Larry A. Gallagher, Elena Velázquez, Snow Brook Peterson, James C. Charity, FoSheng Hsu, Matthew C. Radey, Michael J. Gebhardt, Marcos H. de Moraes, Kelsi M. Penewit, Jennifer S. Kim, Pia A. Andrade, Thomas LaFramboise, Stephen J. Salipante, Vı́ctor de Lorenzo, Paul A. Wiggins, , Joseph D. Mougous
This paper introduces a method called 3D-seq to map DNA-protein interaction sites in vivo using a modified cytosine deaminase, demonstrating its application in Pseudomonas aeruginosa transcription factors.
bioRxiv · Aug 1, 2021 · PreprintGenetics