Author

Pierre Fumeron

Inserm

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Joshua J. WaterfalliD· 2 shared Nicolas PerriniD· 2 shared Alexandre LanauiD· 1 shared Erkan NarmanliiD· 1 shared Mara NeacsuiD· 1 shared Maria K. KoshkinaiD· 1 shared Nicolas ServantiD· 1 shared Nisma Amjad· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Joshua J. WaterfallORCID

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2 papers

Recent·Most cited

An alignment-last approach enables rapid transcriptomic biomarker discovery in large cohorts

Erkan Narmanli, Alexandre Lanau, Mara Neacsu, Maria K. Koshkina, Pierre Fumeron, Philippe Martin, Nicolas Servant, Nicolas Perrin, Joshua J. Waterfall

This paper introduces an alignment-last approach to transcriptomic analysis, enabling rapid biomarker discovery by using reads directly and revealing new transposable-element signatures and prognostic reads in cancer.

bioRxiv · Sep 3, 2026 · PreprintBioinformatics

Yomix: An Interactive Tool for the Exploration of Low-Dimensional Embeddings in Omics Data

Nicolas Perrin, Nisma Amjad, Pierre Fumeron, Silvia Tulli, Joshua J. Waterfall

Yomix is an interactive tool for exploring low-dimensional embeddings in omics data, allowing users to define subsets, compute feature signatures, and compare distributions.

Bioinformatics · May 1, 2026Peer-reviewedBioinformatics