Author

Philippe Martin

InsermPrimary ORCID profile (0000-0003-0053-6617 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Philippe MartiniD1 paper · Université de Sherbrooke

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Joshua J. WaterfalliD· 2 shared Agathe Seguin‐GiveletiD· 1 shared Alexandre LanauiD· 1 shared Christine SedlikiD· 1 shared Édith BorcomaniD· 1 shared Eliane PiaggioiD· 1 shared Elisa BonniniD· 1 shared Erkan NarmanliiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Joshua J. WaterfallORCID

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2 papers

Recent·Most cited

An alignment-last approach enables rapid transcriptomic biomarker discovery in large cohorts

Erkan Narmanli, Alexandre Lanau, Mara Neacsu, Maria K. Koshkina, Pierre Fumeron, Philippe Martin, Nicolas Servant, Nicolas Perrin, Joshua J. Waterfall

This paper introduces an alignment-last approach to transcriptomic analysis, enabling rapid biomarker discovery by using reads directly and revealing new transposable-element signatures and prognostic reads in cancer.

bioRxiv · Sep 3, 2026 · PreprintBioinformatics

Common origin for effector and regulatory Follicular and Tissue-Adapted CD4+ T cells in Non-Small Cell Lung Cancer

Jimena Tosello, Wilfrid Richer, Yoann Missolo-Koussou, Elisa Bonnin, Sébastien Lemoine, Marco Antônio M. Pretti, Rodrigo Nalio Ramos, Jordan Denizeau, Sylvain Baulande, Mylène Bohec, Sonia Lameiras, Philippe Martin, Rafael Mena‐Osuna, Jérémy Mesple, Wenjie Sun, , Eliane Piaggio

The paper identifies a common origin for effector and regulatory CD4+ T cells in non-small cell lung cancer through single-cell analysis, revealing their plasticity and role in immune responses.

bioRxiv · Sep 17, 2025 · PreprintImmunology