Author

Nicolas Perrin

Centre National de la Recherche ScientifiqueORCID 0000-0001-8626-1938Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Joshua J. WaterfalliD· 2 shared Pierre Fumeron· 2 shared Alexandre LanauiD· 1 shared Erkan NarmanliiD· 1 shared Mara NeacsuiD· 1 shared Maria K. KoshkinaiD· 1 shared Nicolas ServantiD· 1 shared Nisma Amjad· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Joshua J. WaterfallORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 3, 2026

An alignment-last approach enables rapid transcriptomic biomarker discovery in large cohorts

Erkan Narmanli, Alexandre Lanau, Mara Neacsu…·Joshua J. Waterfall

This paper introduces an alignment-last approach to transcriptomic analysis, enabling rapid biomarker discovery by using reads directly and revealing new transposable-element signatures and prognostic reads in cancer.

1 citation

humanbulk RNA-seq

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BioinformaticsBioinformaticsPeer-reviewedMay 1, 2026

Yomix: An Interactive Tool for the Exploration of Low-Dimensional Embeddings in Omics Data

Nicolas Perrin, Nisma Amjad, Pierre Fumeron…·Joshua J. Waterfall

Yomix is an interactive tool for exploring low-dimensional embeddings in omics data, allowing users to define subsets, compute feature signatures, and compare distributions.

DOI 10.1093/bioinformatics/btag301

bulk RNA-seqATAC-seq

𝕏 PostBluesky