Author

S. Chakravorty

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Research Focus:host-pathogen & immune response· 3 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

B. Afzali· 2 shared B. Yan· 2 shared J. L. Trujillo-Ochoa· 2 shared L. Wang· 2 shared M. Kazemian· 2 shared M. R. Olson· 2 shared B. Zhao· 1 shared C. Denkinger· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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2 shared papersMicrobiology

B. Afzali

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Author profile →

4 papers

Recent·Most cited

Functional loss of rffG and rfbB, encoding dTDP-glucose 4,6-dehydratase, changes colony morphology, cell shape, motility and virulence in Salmonella Typhimurium

S. Chakravorty, P. Banerjee, J. P. Joseph, S. Pathak, T. Verma, M. Das, D. Nandi

This study shows that deleting both rffG and rfbB in Salmonella Typhimurium causes changes in cell shape, motility, and virulence.

bioRxiv · Jun 27, 2023 · PreprintMicrobiology

A comprehensive single cell data analysis of in lymphoblastoid cells reveals the role of Super-enhancers in maintaining EBV latency

B. Yan, C. Wang, S. Chakravorty, Z. Zhang, S. D. Kadadi, Y. Zhuang, I. Sirit, Y. Hu, M. Jung, S. Sahoo, L. Wang, K. Shao, N. L. Anderson, J. L. Trujillo-Ochoa, X. Liu, , M. Kazemian

This study uses scRNA-seq to analyze EBV latency in lymphoblastoid cells, identifying two distinct clusters with different EBV gene expression and revealing the role of super-enhancers in maintaining latency.

bioRxiv · Aug 10, 2022Microbiology

Host-virus chimeric events in SARS-CoV2 infected cells are infrequent and artifactual

B. Yan, S. Chakravorty, C. Mirabelli, L. Wang, J. L. Trujillo-Ochoa, D. Chauss, D. Kumar, M. S. Lionakis, M. R. Olson, C. E. Wobus, B. Afzali, M. Kazemian

This study investigates host-virus chimeric (HVC) events in SARS-CoV2 RNA-seq data and finds they are rare and likely artifacts, not evidence of viral integration.

Journal of Virology · Jul 12, 2021Peer-reviewedMicrobiology

Xpert MTB/XDR: A ten-color reflex assay suitable for point of care settings to detect isoniazid-, fluoroquinolone-, and second line injectable drug-resistance directly from Mycobacterium tuberculosis positive sputum.

Y. Cao, H. Parmar, R. Gaur, S. Raghunath, D. Lieu, N. Via, S. Battagalia, D. M. Cirillo, C. Denkinger, S. B. Georghiou, R. Kwiatkowski, D. Persing, D. Alland, S. Chakravorty

The paper describes the development and evaluation of a 10-color Xpert MTB/XDR assay for rapid detection of drug resistance in tuberculosis directly from sputum samples.

bioRxiv · Sep 8, 2020Microbiology