Author

S. G. Tringe

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 8 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 8 Assay:metagenomics· 8 Research Focus:cell type annotation· 4 Research Focus:ecology & biodiversity· 3 Research Focus:gene regulatory network inference· 3 Organism:bacteria (other)· 2 Research Focus:clustering· 2 Approach:statistical model· 2

Frequent Co-Authors

T. Glavina del Rio· 4 shared J. F. Banfield· 3 shared A. J. Probst· 2 shared C. J. Castelle· 2 shared C. M. K. Sieber· 2 shared M. Hess· 2 shared R. R. Malmstrom· 2 shared S. Bertilsson· 2 shared

Activity by Year

2017-2024 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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4 shared papersMicrobiology

T. Glavina del Rio

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Author profile →

10 papers

Recent·Most cited

Microbial ecology and site characteristics underlie differences in salinity-methane relationships in coastal wetlands

C. P. Bueno de Mesquita, W. H. Hartman, M. Ardon, E. S. Bernhardt, S. C. Neubauer, N. B. Weston, S. G. Tringe

The paper examines how microbial ecology and site characteristics influence salinity-methane relationships in coastal wetlands, finding site-specific variations in CH4 flux responses to salinization.

bioRxiv · Apr 2, 2024Microbiology

Iodidimonas, a bacterium unable to degrade hydrocarbons, thrives in a bioreactor treating oil and gas produced water

S. M. Acharya, B. C. Enalls, P. J. Walian, B. D. Van Houghton, J. S. Rosenblum, T. Y. Cath, S. G. Tringe, R. Chakraborty

The paper characterizes Iodidimonas isolates from a bioreactor treating oil and gas produced water, showing they lack hydrocarbon degradation genes but have stress mitigation genes.

bioRxiv · Mar 2, 2023 · PreprintEcology

Identification of beneficial and detrimental bacteria that impact sorghum responses to drought using multi-scale and multi-system microbiome comparisons

M. Qi, J. C. Berry, K. Veley, L. O'Connor, O. M. Finkel, I. Salas-Gonzalez, M. Kuhs, J. Jupe, E. Holcomb, T. Glavina del Rio, C. Creech, P. Liu, S. G. Tringe, J. L. Dangl, D. Schachtman, R. Bart

The paper identifies beneficial and detrimental bacteria affecting sorghum drought responses using lab, transitional, and field experiments.

bioRxiv · Apr 13, 2021 · PreprintMicrobiology

Phototrophic co-cultures from extreme environments: community structure and potential value for fundamental and applied research

C. Shaw, C. G. Brooke, M. P. Connolly, J. A. Garcia, M. Harmon-Smith, N. Shapiro, E. Hawley, M. Barton, S. G. Tringe, T. Glavina del Rio, D. E. Culley, R. Castenholtz, M. Hess

The paper evaluates photosynthetic co-cultures from extreme environments using 16S rRNA gene sequencing to explore their potential in understanding microbial roles in carbon and nitrogen cycling.

bioRxiv · Jun 25, 2020Microbiology

Unusual metabolism and hypervariation in the genome of a Gracilibacteria (BD1-5) from an oil degrading community

C. M. K. Sieber, B. G. Paul, C. J. Castelle, P. Hu, S. G. Tringe, D. L. Valentine, G. L. Andersen, J. F. Banfield

The paper reports the first closed genome of a Gracilibacteria from an oil-degrading community, revealing unusual metabolism and a hypervariable repeat region with potential functional significance.

bioRxiv · Apr 1, 2019Microbiology

Clades of huge phage from across Earth’s ecosystems

B. Al-Shayeb, R. Sachdeva, L.-X. Chen, F. Ward, P. Munk, A. Devoto, C. J. Castelle, M. R. Olm, K. Bouma-Gregson, Y. Amano, C. He, R. Meheust, B. Brooks, A. Thomas, A. Lavy, , J. F. Banfield

The paper identifies major clades of large phage genomes across diverse ecosystems and highlights their expanded genetic repertoires and potential functional roles.

bioRxiv · Mar 11, 2019Microbiology

Peatland Acidobacteria with a dissimilatory sulfur metabolism

B. Hausmann, C. Pelikan, C. W. Herbold, S. Koestlbacher, M. Albertsen, S. A. Eichorst, T. Glavina del Rio, M. Huemer, P. H. Nielsen, T. Rattei, U. Stingl, S. G. Tringe, D. Trojan, C. Wentrup, D. Woebken, , A. Loy

The paper identifies novel Acidobacteria in peatlands with sulfur metabolism capabilities, including both sulfate respiration and sulfur oxidation, and highlights their ecological roles in organic matter decomposition.

bioRxiv · Oct 2, 2017Microbiology

Ecophysiology of freshwater Verrucomicrobia inferred from metagenome-assembled genomes

S. He, S. L. Stevens, L.-K. Chan, S. Bertilsson, T. Glavina del Rio, S. G. Tringe, R. R. Malmstrom, K. McMahon

This study recovers 19 Verrucomicrobia draft genomes from freshwater metagenomes to explore their ecophysiology and role in carbon cycling.

bioRxiv · Aug 16, 2017Microbiology

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

S. L. Garcia, S. L. R. Stevens, B. Crary, M. Martinez-Garcia, R. Stepanauskas, T. Woyke, S. G. Tringe, S. Andersson, S. Bertilsson, R. R. Malmstrom, K. D. McMahon

The paper examines genetic and ecological differentiation in freshwater bacterial populations using single-cell genomes and metagenomic data, finding ecologically distinct populations within some lineages but not others.

bioRxiv · Aug 16, 2017Evolutionary Biology

Recovery of genomes from metagenomes via a dereplication, aggregation, and scoring strategy

C. M. K. Sieber, A. J. Probst, A. Sharrar, B. C. Thomas, M. Hess, S. G. Tringe, J. F. Banfield

This paper introduces DAS Tool, a metagenomic binning method that improves genome recovery accuracy and completeness across diverse samples.

bioRxiv · Feb 11, 2017Microbiology