Author

S. Raguideau

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 6 Research Focus:cell type annotation· 4 Approach:statistical model· 4 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2 Research Focus:cell-cell communication· 1

Frequent Co-Authors

C. Quince· 6 shared A. Bottrill· 2 shared A. C. Singer· 2 shared C. Borsetto· 2 shared E. M. H. Wellington· 2 shared E. R. Travis· 2 shared I. D. E. A. Lidbury· 2 shared o. s. soyer· 2 shared

Activity by Year

2020-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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6 shared papersMicrobiology

C. Quince

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Niche formation and metabolic interactions result in stable diversity in a spatially structured cyanobacterial community

S. J. N. Duxbury, S. Raguideau, K. Cremin, J. Rosko, M. Coates, K. Randall, J. Chen, C. Quince, o. s. soyer

The paper investigates a spatially structured cyanobacterial community, finding that niche formation and metabolic interactions maintain stable diversity over time.

bioRxiv · Dec 13, 2022 · PreprintMicrobiology

Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere

G. Muscatt, S. Hilton, S. Raguideau, G. Teakle, I. D. E. A. Lidbury, E. M. H. Wellington, C. Quince, A. Millard, G. D. Bending, E. Jameson

The paper investigates how crop management affects viral diversity and activity in soil, revealing 'viral priming' and its impact on plant-microbe interactions.

Microbiome · Oct 24, 2022Peer-reviewedEcology

Meta-exoproteomics identifies active plant-microbe interactions operating in the rhizosphere

I. D. E. A. Lidbury, S. Raguideau, S. Lui, A. Murphy, R. Stark, C. Borsetto, T. Fraser, A. Goodall, A. Bottrill, A. M. E. Jones, G. Bending, M. Tibbett, J. Hammond, C. Quince, D. Scanlan, , E. Wellington

This study uses meta-exoproteomics to identify active plant-microbe interactions in the rhizosphere of Brassica spp., revealing metabolic shifts linked to plant growth.

bioRxiv · Sep 1, 2021 · PreprintMicrobiology

Novel microbial syntrophies identified by longitudinal metagenomics

S. Raguideau, A. Trego, F. Farrell, G. Collins, C. Quince, O. S. Soyer

Longitudinal study of microbial communities identifies novel species and predicts their interactions and role in community function.

bioRxiv · Jul 5, 2021 · PreprintMicrobiology

Impact of sulfamethoxazole on a riverine microbiome

C. Borsetto, S. Raguideau, E. R. Travis, D.-W. Kim, D.-H. Lee, A. Bottrill, R. Stark, L. Song, C.-J. Cha, J. Pearson, C. Quince, A. C. Singer, E. M. H. Wellington

This study investigates the impact of sub-lethal sulfamethoxazole concentrations on river bacterial microbiomes using a flume system and omics approaches, finding limited effects on the resistome and no changes in ARG expression.

bioRxiv · Apr 1, 2021Microbiology

Impact of trimethoprim on the river microbiome and antimicrobial resistance.

J. Delaney, S. Raguideau, J. Holden, L. Zhang, H. Tipper, G. Hill, U. Klumper, T. Zhang, R. S. James, E. R. Travis, M. J. Bowes, P. M. Hawkey, H. S. Lindstrom, C. Tang, W. H. Gaze, , E. M. Wellington

This study investigates the relationship between trimethoprim concentrations and antimicrobial resistance gene prevalence in river sites across the Thames catchment, finding significant seasonal and land-use correlations.

bioRxiv · Jun 5, 2020 · PreprintMicrobiology

Gene duplication drives genome expansion in Thaumarchaeota

P. O. Sheridan, S. Raguideau, C. Quince, Thames Consortium, T. A. Williams, C. Gubry-Rangin

This study provides genomes for three remaining families of Thaumarchaeota and shows that gene duplication, loss, and lateral gene transfer drive genomic divergence and evolution in the phylum.

bioRxiv · Apr 28, 2020Evolutionary Biology