Author

J. Holden

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2 Bioengineering· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1

Frequent Co-Authors

A. C. Singer· 1 shared A. Golightly· 1 shared A. Mead· 1 shared A. Tommerdahl· 1 shared A. W. Baggaley· 1 shared B. Kirsch· 1 shared C. R. Quince· 1 shared C. Tang· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperMicrobiology

A. C. Singer

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Author profile →

4 papers

Recent·Most cited

Estimating the reproduction number, R0, from agent-based models of tree disease spread

L. E. Wadkin, J. Holden, R. Ettelaie, M. J. Holmes, J. Smith, A. Golightly, N. G. Parker, A. W. Baggaley

The paper estimates the basic reproduction number R0 for tree diseases using agent-based models and applies these methods to the ash dieback epidemic in the UK.

bioRxiv · Aug 3, 2023 · PreprintEcology

Impact of trimethoprim on the river microbiome and antimicrobial resistance.

J. Delaney, S. Raguideau, J. Holden, L. Zhang, H. Tipper, G. Hill, U. Klumper, T. Zhang, R. S. James, E. R. Travis, M. J. Bowes, P. M. Hawkey, H. S. Lindstrom, C. Tang, W. H. Gaze, , E. M. Wellington

This study investigates the relationship between trimethoprim concentrations and antimicrobial resistance gene prevalence in river sites across the Thames catchment, finding significant seasonal and land-use correlations.

bioRxiv · Jun 5, 2020 · PreprintMicrobiology

Contextualising UK moorland burning studies: geographical versus potential sponsorship-bias effects on research conclusions

L. E. Brown, J. Holden

The paper challenges claims of geographical bias in moorland burning studies, arguing that the EMBER project's conclusions are reliable and that sponsorship bias may influence recent research on moorland burning.

bioRxiv · Aug 15, 2019Ecology

Accuracy of different modalities of reaction time testing: Implications for online cognitive assessment tools.

J. Holden, E. Francisco, R. Lensch, A. Tommerdahl, B. Kirsch, L. Zai, R. Dennis, M. Tommerdahl

This study compares reaction time measurement accuracy across different hardware and software setups, finding that dedicated hardware provides more reliable results than consumer-grade devices.

bioRxiv · Aug 6, 2019 · PreprintBioengineering