Author

Sharmila Chatterjee

Genentech

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1

Frequent Co-Authors

Bob CheniD· 2 shared Conrad FooiD· 2 shared Lisa M. McGinnisiD· 2 shared Orit Rozenblatt–RoseniD· 2 shared Runmin WeiiD· 2 shared Aïcha BenTaiebiD· 1 shared Alma AnderssoniD· 1 shared Alsu M. MissarovaiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersGenomics

Bob ChenORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Spatial Decoding of Tertiary Lymphoid Structure Maturation in Non-Small Cell Lung Cancer Using Deep Neural Networks

Bob Chen, Conrad Foo, Alma Andersson, Brandon D. Kayser, Yiming Yang, Alsu M. Missarova, Priyanka Kulkarni, Jan-Christian Huetter, Sharmila Chatterjee, Youngmi J. Kim, Yan Liang, Emily Killinbeck, Sarah R. Murphy, Eloisa Fuentes, Jennifer Margaret Giltnane, , Lisa M. McGinnis

The paper develops a framework to decode TLS maturation in NSCLC using spatial omics data and deep learning, identifying two distinct spatial ecosystems linked to patient outcomes.

bioRxiv · Jan 20, 2026 · PreprintGenomics

Dictionary of human intestinal organoid responses to secreted niche factors at single cell resolution

Meghan M. Capeling, Bob Chen, Kazeera Aliar, Elisa Penna, Veronica Ibarra Lopez, Conrad Foo, Sandra Rost, Loryn L. Holokai, Xinming Tong, Devan Phillips, Caden W. Sweet, Jing Li, Sharmila Chatterjee, Elizabeth Skippington, Zora D. Modrusan, , Michelle B. Chen

The paper builds a dictionary of human intestinal organoid responses to 81 secreted niche factors using scRNA-seq, mapping perturbations and identifying cell type-specific pathways in an IBD context.

Nature Communications · Jan 9, 2026Peer-reviewedBioengineering