Author

Sitharam Ramaswami

New York University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Assay:imaging· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Andre Luis MoreiraiD· 2 shared Aristotelis TsirigosiD· 2 shared Harvey Ira PassiD· 2 shared Hortense LeiD· 2 shared Kwok‐Kin WongiD· 2 shared Nina Murrell· 2 shared Adriana HeguyiD· 1 shared Anna H. YeatoniD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersCancer Biology

Andre Luis MoreiraORCID

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2 papers

Recent·Most cited

Characterization of tumor heterogeneity through segmentation-free representation learning

Jimin Tan, Hortense Le, Jiehui Deng, Yingzhuo Liu, Yuan Hao, Michelle Hollenberg, Wenke Liu, Joshua M. Wang, Bo Xia, Sitharam Ramaswami, Valeria Mezzano, Cynthia A. Loomis, Nina Murrell, Andre Luis Moreira, Kyunghyun Cho, , David Fenyö

The paper introduces a segmentation-free vision transformer, CANVAS, to discover and characterize tumor microenvironment signatures from high-dimensional multiplexed images, identifying a monocytic signature linked to poor prognosis.

Nature Biomedical Engineering · Feb 20, 2025Peer-reviewedCancer Biology

Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma

Igor Dolgalev, Hua Zhou, Nina Murrell, Hortense Le, Theodore Sakellaropoulos, Nicolas Coudray, Kelsey Zhu, Varshini Vasudevaraja, Anna H. Yeaton, Chandra Goparaju, Yonghua Li, Imran Sulaiman, Jun-Chieh James Tsay, Peter Meyn, Hussein Mohamed, , Aristotelis Tsirigos

This study identifies inflammation in tumor-adjacent lung tissue as a predictor of clinical outcome in lung adenocarcinoma using multi-omic analysis of 143 stage I cases.

Nature Communications · Nov 8, 2023Peer-reviewedBioinformatics