Author

Snehal Ozarkar

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam Lacy‐HulbertiD· 1 shared Adelle P. McFarlandiD· 1 shared Anissa Martinez· 1 shared Babak AlipanahiiD· 1 shared Benjamin W. JesteriD· 1 shared Cameron Cordray· 1 shared Charles Lin· 1 shared Christof AngermuelleriD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperImmunology

Adam Lacy‐HulbertORCID

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2 papers

Recent·Most cited

Lineage-specific chromatin poising enforced by ETS-IRF composite elements determines the divergent interferon responses of plasmacytoid dendritic cells and epithelial cells

Gargi Mishra, Snehal Ozarkar, Yo Okamura, Meghan Knoll, Russell Sam, Hongchuan Li, Johannes Schwerk, Adelle P. McFarland, David A. Constant, Hayley Waterman, Manasa Acharya, Adam Lacy‐Hulbert, Jason G. Smith, Michael A. Parthun, Emily A. Hemann, , Ram Savan

This paper identifies lineage-specific chromatin accessibility differences at IFN gene loci in pDCs and epithelial cells, revealing ETS-IRF composite elements as key regulators of divergent interferon responses.

bioRxiv · Jun 10, 2026 · PreprintImmunology

High-throughput ML-guided design of diverse single-domain antibodies against SARS-CoV-2

Christof Angermueller, Zelda Mariet, Benjamin W. Jester, Emily Engelhart, Ryan Emerson, Babak Alipanahi, Charles Lin, Colleen Shikany, Daniel Guion, Joel B. Nelson, Mary Kelley, Margot McMurray, Parker Shaffer, Cameron Cordray, Samer F. Halabiya, , Lucy J. Colwell

This study uses ML to design diverse VHH antibodies that neutralize SARS-CoV-1 and SARS-CoV-2 variants, including Delta and Omicron BA.1.

bioRxiv · Dec 1, 2023 · PreprintBioinformatics