Author

Stephan Scholz

Heinrich Heine University DüsseldorfPrimary ORCID profile (0000-0002-8383-9498 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Stephan ScholziD1 paper

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:database / resource· 2 Research Focus:variant calling· 2 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Alexander DiltheyiD· 3 shared Lisbeth A. GuethleiniD· 2 shared Nicholas R. PollockiD· 2 shared Paul J. NormaniD· 2 shared Adam M. PhillippyiD· 1 shared Arda SöyleviD· 1 shared Arvis SulovariiD· 1 shared Benedict PateniD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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3 shared papersGenomics

Alexander DiltheyORCID

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3 papers

Recent·Most cited

Complex genetic variation in nearly complete human genomes

Glennis A. Logsdon, Peter Ebert, Peter A. Audano, Mark G. Loftus, David Porubskỳ, Jana Ebler, Feyza Yilmaz, Pille Hallast, Timofey Prodanov, DongAhn Yoo, Carolyn A. Paisie, William T. Harvey, Xuefang Zhao, Gianni V. Martino, Mir Henglin, , Tobias Marschall

Hybrid HiFi/ultra-long ONT assemblies of 65 diverse humans yield 130 haplotypes, 1,246 complete centromeres, and a pangenome panel enabling short-read genome inference at median QV 45.

Nature · Jul 23, 2025Peer-reviewedGenomics✦ In-depth digest

Integer programming framework for pangenome-based genome inference

Ghanshyam Chandra, Md Helal Hossen, Stephan Scholz, Alexander Dilthey, Daniel Gibney, Chirag Jain

The paper introduces an integer programming framework for haplotype-resolved genotyping using pangenome graphs, achieving accurate MHC haplotype inference on low-coverage data.

Lecture notes in computer science · Jan 1, 2025Peer-reviewedBioinformatics

Complete sequences of six Major Histocompatibility Complex haplotypes, including all the major MHC class II structures

Torsten Houwaart, Stephan Scholz, Nicholas R. Pollock, William Hunt Palmer, Katherine M. Kichula, Daniel Rodrigo Strelow, Duyen Bao Le, Dana Belick, Lisanna Hülse, Tobias Lautwein, Thorsten Wachtmeister, Tassilo Erik Wollenweber, Birgit Henrich, Karl Köhrer, Peter Parham, , Alexander Dilthey

The paper completes six MHC haplotypes, including DR1, DR4, and structurally variable C4 regions, improving reference panels for immunogenomics analysis.

HLA · Mar 18, 2023Peer-reviewedGenomics