Author

Sylvain Geny

Institut du Cerveau

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:large language model· 1 Assay:proteomics· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Abdelmalek MouazeriD· 1 shared Agustí AlentorniD· 1 shared Ahmed IdbaïhiD· 1 shared Álvaro Martínez BarrioiD· 1 shared Beijing Wu· 1 shared Christina GalonskaiD· 1 shared Christine Moge· 1 shared Divya ThiagarajaniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Abdelmalek MouazerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

h5adify: neuro-symbolic metadata harmonizationenables scalable AnnData integration with locallarge language models

Lucas Rincón de la Rosa, Abdelmalek Mouazer, Masoud NAVIDI, Edgar Degroodt, Tamara Künzle, Sylvain Geny, Ahmed Idbaïh, Maïté Verrault, Karim Labrèche, Isaias Hernández-Verdín, Agustí Alentorn

h5adify harmonizes metadata from single-cell datasets using neuro-symbolic methods and local LLMs, improving integration and reducing batch effects.

bioRxiv · Mar 3, 2026 · PreprintBioinformatics

Cells as Single-Molecule Protein Proximity Networks

Filip Karlsson, Michele Simonetti, Christina Galonska, Max Karlsson, Hanna van Ooijen, Divya Thiagarajan, Tomasz Kallas, Maud Schweitzer, Ludvig Larsson, Vincent van Hoef, Pouria Tajvar, Johan Dahlberg, Florian De Temmerman, Louise Leijonancker, Vanessa Trombin, , Simon Fredriksson

The paper introduces PNA, a DNA-based method to map protein organization and interactions in single cells, revealing abundance, clustering, and colocalization relationships.

bioRxiv · Jun 19, 2025 · PreprintBioengineering