Author

T. Saeki

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:cell type annotation· 3 Research Focus:clustering· 3 Approach:statistical model· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2

Frequent Co-Authors

K. Arikawa· 3 shared M. Hosokawa· 3 shared A. Matsuhashi· 2 shared H. Takeyama· 2 shared M. Kogawa· 2 shared T. Endoh· 2 shared T. Yoda· 2 shared G. J. Yuen· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersMicrobiology

K. Arikawa

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Author profile →

4 papers

Recent·Most cited

Single Amplified Genome Catalog Reveals the Dynamics of Mobilome and Resistome in the Human Microbiome

T. Kawano-Sugaya, K. Arikawa, T. Saeki, T. Endoh, K. Kamata, A. Matsuhashi, M. Hosokawa

The paper presents a dataset of single amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) from the human microbiome, revealing microbial diversity, mobile genetic elements, and antibiotic resistance gene dynamics.

bioRxiv · Dec 6, 2023Microbiology

Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing

M. Kogawa, Y. Nishikawa, T. Saeki, T. Yoda, K. Arikawa, H. Takeyama, M. Hosokawa

This study develops a single-cell long-read sequencing workflow to generate complete bacterial genomes from uncultured human gut bacteria, revealing structural diversity and phage insertions within species.

bioRxiv · Mar 24, 2022Microbiology

Recovery of high-quality assembled genomes via metagenome binning guided with single-cell amplified genomes

K. Arikawa, K. Ide, M. Kogawa, T. Saeki, T. Yoda, T. Endoh, A. Matsuhashi, H. Takeyama, M. Hosokawa

This paper introduces MetaSAG, a method using single-cell genomes to improve metagenome binning, resulting in higher quality and strain-resolved microbial genomes from complex communities.

bioRxiv · Jan 11, 2021 · PreprintMicrobiology

The expansion in lymphoid organs of IL-4+ BATF+ T follicular helper cells is linked to IgG4 class switching in vivo

S. Pillai, J. Stone, S. Nakamura, T. Kiyoshima, J. Daccache, M. Yamauchi, H. Yamamoto, T. Saeki, M. Moriyama, M. Ohta, N. Ishiguro, G. J. Yuen, S. L. Murphy, V. Mahajan, H. Mattoo, T. Maehara

The paper identifies IL-4+ BATF+ T follicular helper cells in IgG4-related disease that correlate with IgG4 class switching in lymphoid organs.

bioRxiv · Mar 19, 2018Immunology