PIGSTI: a modular, reproducible pipeline for detecting species identity, pathogens, and microbes from animal palaeogenomic data
Louis L’Hôte, Catherine Butt, Áine Halpin, Luisa Sacristán, Valeria Mattiangeli, Pernille Bangsgaard, Lisa Yeomans, Melinda A. Zeder, Marjan Mashkour, Hossein Davoudi, Svend Hansen, Delphine Decruyenaere, Melissa Kennedy, Adeline Vautrin, Alisher Begmatov, , Kevin G. Daly
PIGSTI detects species identity, pathogens, and microbes in ancient animal genomic data, identifying 15 zoonotic pathogens including Rickettsia felis and Leptospira borgpetersenii.
bioRxiv · Sep 6, 2026 · PreprintGenomics