Author

Tomasz J. Nowakowski

University of California, San FranciscoPrimary ORCID profile (0000-0003-2345-4964 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Tomasz J. NowakowskiiD1 paper · University of California, San Francisco

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cell Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:clustering· 1 Assay:electronic health records· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Alex A. PolleniD· 1 shared Alex A. Pollen· 1 shared Alex SpaethiD· 1 shared Aparna BhaduriiD· 1 shared Arnold R. KriegsteiniD· 1 shared Arnold R. Kriegstein· 1 shared Ash RobbinsiD· 1 shared Carmen Sandoval-Espinosa· 1 shared

Activity by Year

2016-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Alex A. PollenORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Multiscale Cloud-based Pipeline for Neuronal Electrophysiology Analysis and Visualization

Jinghui Geng, Kateryna Voitiuk, David F. Parks, Ash Robbins, Alex Spaeth, Jessica L. Sevetson, Sebastian Hernandez, H. Schweiger, John P. Andrews, Spencer T. Seiler, Matthew A.T. Elliott, Edward F. Chang, Tomasz J. Nowakowski, Rob Currie, Mohammed A. Mostajo-Radji, , Mircea Teodorescu

The paper presents a cloud-based pipeline for analyzing and visualizing neuronal electrophysiology data from HD-MEAs, demonstrating its utility in simplifying data analysis and understanding neural activity.

Array · Jun 19, 2026Peer-reviewedNeuroscience

Saturating Single-Cell Datasets

Aparna Bhaduri, Tomasz J. Nowakowski, Alex A. Pollen, Arnold R. Kriegstein

The paper investigates the relationship between cell number and transcriptional heterogeneity in single-cell datasets, finding that 50,000 cells can capture most biologically meaningful insights from 1.3 million cells.

bioRxiv · Nov 12, 2017 · PreprintBioinformatics

Zika Virus in the Human Placenta and Developing Brain: Cell Tropism and Drug Inhibition

Hanna Retallack, Elizabeth Di Lullo, Carolina Arias, Kristeene A. Knopp, Carmen Sandoval-Espinosa, Matthew T. Laurie, Yan Zhou, Matthew Gormley, Walter R. Mancia Leon, Robert Krencik, Erik M. Ullian, Julien Spatazza, Alex A. Pollen, Katherine Ona, Tomasz J. Nowakowski, , Arnold R. Kriegstein

This study identifies ZIKV susceptible cell types in placenta and brain, shows antibiotic inhibition of viral proliferation, and suggests mechanisms for congenital ZIKV pathologies.

bioRxiv · Jun 15, 2016 · PreprintCell Biology