Author

Torsten Wüstefeld

Agency for Science, Technology and Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Andre SimiD· 2 shared Jonathan GökeiD· 2 shared Ying CheniD· 2 shared Agnes Bee Leng OngiD· 1 shared Alexander LezhavaiD· 1 shared Alexandre H. ThiéryiD· 1 shared Alicia OshlackiD· 1 shared Arnaud PerriniD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Andre SimORCID

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Author profile →

2 papers

Recent·Most cited

A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines

Ying Chen, N. Davidson, Yuk Kei Wan, Fei Yao, Yan Su, Hasindu Gamaarachchi, Andre Sim, Harshil Patel, Hwee Meng Low, Christopher Hendra, Laura Wratten, Christopher Hakkaart, Chelsea Sawyer, Viktoriia Iakovleva, Puay Leng Lee, , Jonathan Göke

This study benchmarks Nanopore long read RNA sequencing in human cell lines, showing improved isoform resolution compared to short reads.

Nature Methods · Mar 13, 2025Peer-reviewedGenomics

Isoform-level discovery, quantification and fusion analysis from single-cell and spatial long-read RNA-seq data with Bambu-Clump

Andre Sim, Min Hao Ling, Ying Chen, Han Lu, Yi Xiang See, Arnaud Perrin, Agnes Bee Leng Ong, Elaine Yiqun Cao, Burton Kuan Hui Chia, Jinyue Liu, Torsten Wüstefeld, Jay W. Shin, Jonathan Göke

Bambu-Clump improves transcript discovery and quantification from single-cell and spatial long-read RNA-seq data by leveraging cell and cluster information.

bioRxiv · Dec 30, 2024 · PreprintBioinformatics