Author

Wenxin Zhao

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Sheng ZhongiD· 3 shared Xingzhao WeniD· 3 shared John Lalith Charles RichardiD· 2 shared Alex AbrahamiD· 1 shared Alexander D. VeitiD· 1 shared Alexander KukaleviD· 1 shared Ana PomboiD· 1 shared Andrea EspositoiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Sheng ZhongORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

An integrated view of the structure and function of the human 4D nucleome

Job Dekker, Betül Akgöl Oksuz, Yang Zhang, Ye Wang, Miriam K. Minsk, Shuzhen Kuang, Liyan Yang, Johan Harmen Gibcus, Nils Krietenstein, Oliver J. Rando, Jie Xu, Derek H. Janssens, Steven Henikoff, Alexander Kukalev, Andréa Willemin, , Feng Yue

The paper integrates 4D Nucleome data to analyze 3D genome structure and function in human cells, revealing chromatin domains, loops, and interactions, and showing how genetic variants affect genome folding.

Nature · Dec 17, 2025Peer-reviewedGenomics

Genome-Wide Mapping of RNA-Protein Associations via Sequencing

Zhijie Qi, Shuanghong Xue, Junchen Chen, Wenxin Zhao, Kara Johnson, Xingzhao Wen, John Lalith Charles Richard, Sheng Zhong

PRIM-seq maps RNA-protein interactions by generating chimeric DNA sequences, revealing over 350,000 RNA-protein pairs in human cells.

bioRxiv · Sep 4, 2024 · PreprintMolecular Biology

Single-cell multiplex chromatin and RNA interactions in aging human brain

Xingzhao Wen, Zhifei Luo, Wenxin Zhao, Riccardo Calandrelli, Tri C. Nguyen, Xueyi Wan, John Lalith Charles Richard, Sheng Zhong

The paper introduces MUSIC, a technique to profile chromatin interactions, gene expression, and RNA-chromatin associations in single cells, revealing age-related changes and disease associations in human brain samples.

bioRxiv · Jun 28, 2023 · PreprintGenomics