Author

Xiaoxue Shi

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Neuroscience· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:mouse· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Assay:electronic health records· 1

Frequent Co-Authors

Biyu ReniD· 2 shared Dan WangiD· 2 shared Luyao Han· 2 shared Mingkun Hao· 2 shared Xiaofei WangiD· 2 shared Xiaohong XuiD· 2 shared Yikai Liang· 2 shared Zhuolei JiaoiD· 2 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersNeuroscience

Biyu RenORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Activation of hypothalamic-pontine-spinal pathway promotes locomotor initiation and functional recovery after spinal cord injury in mice

Chengyue Ji, Yunfan Zhang, Zeyu Lin, Ziqi Zhao, Zhuolei Jiao, Zhiyuan Vera Zheng, Xiaoxue Shi, Xiaofei Wang, Ziyu Li, Yu Shuisheng, Yun Qu, Yaxuan Wei, Tan Rui, Bowen Zheng, Taorong Xie, , Yi Li

This study identifies a hypothalamic-pontine-spinal pathway that promotes locomotion and functional recovery after spinal cord injury in mice through optogenetic manipulation and deep brain stimulation.

Nature Communications · Dec 6, 2025Peer-reviewedNeuroscience

Spatially resolved molecular and cellular atlas of the mouse brain

Lei Han, Zhen Liu, Zehua Jing, Yuxuan Liu, Huizhong Chang, Junjie Lei, Yujie Peng, Kexin Wang, Yuanfang Xu, Wei Liu, Zihan Wu, Qian Li, Xiaoxue Shi, Mingyuan Zheng, He Wang, , Sha Liao

The paper creates a high-resolution spatial transcriptomic atlas of the mouse brain using snRNA-seq and Stereo-seq, identifying new cell clusters, region-specific genes, and transcription factor regulons.

bioRxiv · Dec 3, 2023 · PreprintNeuroscience

Projectome-defined subtypes and modular intra-hypothalamic subnetworks of peptidergic neurons

Zhuolei Jiao, Taosha Gao, Xiaofei Wang, Wen Zhang, Nasim Biglari, Emma E. Boxer, Lukas Steuernagel, Xiaojing Ding, Zixian Yu, Mingjuan Li, Mingkun Hao, Hua Kun Zhou, Xuanzi Cao, Shuaishuai Li, Tao Jiang, , Xiaohong Xu

The paper identifies 31 projectome-defined subtypes of hypothalamic neurons and six modular subnetworks, revealing the organization of axon projections and their functional roles.

bioRxiv · May 25, 2023 · PreprintNeuroscience